ENSG00000179583


Homo sapiens

Features
Gene ID: ENSG00000179583
  
Biological name :CIITA
  
Synonyms : CIITA / class II major histocompatibility complex transactivator / P33076
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: 1
Band: p13.13
Gene start: 10866222
Gene end: 10943021
  
Corresponding Affymetrix probe sets: 205101_at (Human Genome U133 Plus 2.0 Array)   210925_at (Human Genome U133 Plus 2.0 Array)   211884_s_at (Human Genome U133 Plus 2.0 Array)   238376_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000485010
Ensembl peptide - ENSP00000484761
Ensembl peptide - ENSP00000489907
Ensembl peptide - ENSP00000496240
Ensembl peptide - ENSP00000495431
Ensembl peptide - ENSP00000490205
Ensembl peptide - ENSP00000316328
Ensembl peptide - ENSP00000371257
Ensembl peptide - ENSP00000459608
Ensembl peptide - ENSP00000459829
NCBI entrez gene - 4261     See in Manteia.
OMIM - 600005
RefSeq - XM_011522496
RefSeq - XM_011522485
RefSeq - XM_011522486
RefSeq - XM_011522487
RefSeq - XM_011522488
RefSeq - XM_011522489
RefSeq - XM_011522490
RefSeq - XM_011522491
RefSeq - XM_011522492
RefSeq - XM_011522493
RefSeq - XM_011522494
RefSeq - XM_011522495
RefSeq - NM_000246
RefSeq - NM_001286402
RefSeq - NM_001286403
RefSeq - XM_006720880
RefSeq - XM_011522484
RefSeq Peptide - NP_000237
RefSeq Peptide - NP_001273331
RefSeq Peptide - NP_001273332
swissprot - I3L2E5
swissprot - I3L2P7
swissprot - A0A1B0GUQ8
swissprot - Q29704
swissprot - A0A087X2I7
swissprot - P33076
swissprot - A0A1B0GU01
swissprot - A0A0B4J1S1
Ensembl - ENSG00000179583
  
Related genetic diseases (OMIM): 180300 - {Rheumatoid arthritis, susceptibility to}, 180300
  209920 - Bare lymphocyte syndrome, type II, complementation group A, 209920
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ciitaENSDARG00000090851Danio rerio
 CIITAENSGALG00000007171Gallus gallus
 CiitaENSMUSG00000022504Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NLRC5 / Q86WI3 / NLR family CARD domain containing 5ENSG0000014085322
NOD1 / Q9Y239 / nucleotide binding oligomerization domain containing 1ENSG0000010610015
NLRC3 / Q7RTR2 / NLR family CARD domain containing 3ENSG0000016798414
NOD2 / Q9HC29 / nucleotide binding oligomerization domain containing 2ENSG0000016720714
NLRX1 / Q86UT6 / NLR family member X1ENSG0000016070313


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR007111  NACHT nucleoside triphosphatase
 IPR008095  MHC class II transactivator
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006954 inflammatory response IEA
 biological_processGO:0006955 immune response TAS
 biological_processGO:0007568 aging IEA
 biological_processGO:0016310 phosphorylation IEA
 biological_processGO:0032966 negative regulation of collagen biosynthetic process IC
 biological_processGO:0034341 response to interferon-gamma IEA
 biological_processGO:0045345 positive regulation of MHC class I biosynthetic process IDA
 biological_processGO:0045348 positive regulation of MHC class II biosynthetic process IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IDA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0046677 response to antibiotic IDA
 biological_processGO:0060333 interferon-gamma-mediated signaling pathway TAS
 biological_processGO:0071257 cellular response to electrical stimulus IEA
 biological_processGO:0071346 cellular response to interferon-gamma IEA
 biological_processGO:0071360 cellular response to exogenous dsRNA IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0016605 PML body IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003713 transcription coactivator activity TAS
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0005525 GTP binding IEA
 molecular_functionGO:0008022 protein C-terminus binding IPI
 molecular_functionGO:0016301 kinase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016746 transferase activity, transferring acyl groups IEA
 molecular_functionGO:0033613 activating transcription factor binding IPI
 molecular_functionGO:0044212 transcription regulatory region DNA binding IDA
 molecular_functionGO:0044877 protein-containing complex binding IDA


Pathways (from Reactome)
Pathway description
Interferon gamma signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000010 Recurrent urinary tract infections "Repeated infections of the urinary tract." [HPO:curators]
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 HP:0001080 Biliary tract abnormality 
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 HP:0001508 Failure to thrive 
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 HP:0001875 Neutropenia 
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 HP:0002024 Malabsorption 
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 HP:0002383 Encephalitis 
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 HP:0002583 Severe colitis 
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 HP:0002718 Recurrent bacterial infections 
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 HP:0002728 Chronic mucocutaneous candidiasis 
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 HP:0002783 Recurrent lower respiratory tract infections 
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 HP:0002788 Recurrent upper respiratory tract infections 
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 HP:0002841 Fungal infections, recurrent 
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 HP:0002965 Cutaneous anergy 
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 HP:0003139 Panhypogammaglobulinemia 
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 HP:0004385 Protracted diarrhea 
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 HP:0004429 Recurrent viral infections 
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 HP:0004432 Agammaglobulinemia 
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 HP:0005386 Frequent bacterial, viral, protozoan, and fungal infections 
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 HP:0006562 Viral hepatitis 
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 HP:0007041 Chronic lymphocytic meningitis 
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 HP:0011473 Villous atrophy "The enteric villi are atrophic or absent." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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