ENSG00000167207


Homo sapiens

Features
Gene ID: ENSG00000167207
  
Biological name :NOD2
  
Synonyms : NOD2 / nucleotide binding oligomerization domain containing 2 / Q9HC29
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: 1
Band: q12.1
Gene start: 50693588
Gene end: 50734041
  
Corresponding Affymetrix probe sets: 220066_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000463423
Ensembl peptide - ENSP00000464065
Ensembl peptide - ENSP00000496533
Ensembl peptide - ENSP00000495993
Ensembl peptide - ENSP00000493088
Ensembl peptide - ENSP00000300589
Ensembl peptide - ENSP00000431681
Ensembl peptide - ENSP00000435149
Ensembl peptide - ENSP00000437246
Ensembl peptide - ENSP00000462443
Ensembl peptide - ENSP00000463145
NCBI entrez gene - 64127     See in Manteia.
OMIM - 605956
RefSeq - XM_006721242
RefSeq - XM_011523260
RefSeq - XM_017023535
RefSeq - XM_017023536
RefSeq - XM_017023537
RefSeq - XM_017023538
RefSeq - NM_022162
RefSeq - XM_005256084
RefSeq - XM_011523259
RefSeq - NM_001293557
RefSeq Peptide - NP_001280486
RefSeq Peptide - NP_071445
swissprot - Q9HC29
swissprot - E9PK30
swissprot - A0A286YF65
swissprot - H0YF53
swissprot - J3QL80
swissprot - E9PLF7
Ensembl - ENSG00000167207
  
Related genetic diseases (OMIM): 186580 - Blau syndrome, 186580
  266600 - {Inflammatory bowel disease 1, Crohn disease}, 266600
  607507 - {Psoriatic arthritis, susceptibility to}, 607507
  617321 - {Yao syndrome}, 617321
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nod2ENSDARG00000010756Danio rerio
 Nod2ENSMUSG00000055994Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NOD1 / Q9Y239 / nucleotide binding oligomerization domain containing 1ENSG0000010610030
NLRC3 / Q7RTR2 / NLR family CARD domain containing 3ENSG0000016798422
NLRC5 / Q86WI3 / NLR family CARD domain containing 5ENSG0000014085319
NLRX1 / Q86UT6 / NLR family member X1ENSG0000016070317
CIITA / P33076 / class II major histocompatibility complex transactivatorENSG0000017958316


Protein motifs (from Interpro)
Interpro ID Name
 IPR001315  CARD domain
 IPR001611  Leucine-rich repeat
 IPR007111  NACHT nucleoside triphosphatase
 IPR011029  Death-like domain superfamily
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000187 activation of MAPK activity TAS
 biological_processGO:0002367 cytokine production involved in immune response IMP
 biological_processGO:0002374 cytokine secretion involved in immune response IMP
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0002606 positive regulation of dendritic cell antigen processing and presentation ISS
 biological_processGO:0002732 positive regulation of dendritic cell cytokine production IEA
 biological_processGO:0002830 positive regulation of type 2 immune response IMP
 biological_processGO:0006952 defense response TAS
 biological_processGO:0007254 JNK cascade TAS
 biological_processGO:0007584 response to nutrient IEA
 biological_processGO:0008284 positive regulation of cell proliferation IEA
 biological_processGO:0009595 detection of biotic stimulus TAS
 biological_processGO:0016045 detection of bacterium IDA
 biological_processGO:0016579 protein deubiquitination TAS
 biological_processGO:0030277 maintenance of gastrointestinal epithelium IMP
 biological_processGO:0032495 response to muramyl dipeptide IEA
 biological_processGO:0032498 detection of muramyl dipeptide IDA
 biological_processGO:0032731 positive regulation of interleukin-1 beta production IMP
 biological_processGO:0032733 positive regulation of interleukin-10 production ISS
 biological_processGO:0032740 positive regulation of interleukin-17 production IMP
 biological_processGO:0032755 positive regulation of interleukin-6 production IDA
 biological_processGO:0032757 positive regulation of interleukin-8 production IMP
 biological_processGO:0032760 positive regulation of tumor necrosis factor production IDA
 biological_processGO:0032874 positive regulation of stress-activated MAPK cascade IDA
 biological_processGO:0035556 intracellular signal transduction IDA
 biological_processGO:0042742 defense response to bacterium IDA
 biological_processGO:0042981 regulation of apoptotic process IEA
 biological_processGO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling IDA
 biological_processGO:0043406 positive regulation of MAP kinase activity ISS
 biological_processGO:0043552 positive regulation of phosphatidylinositol 3-kinase activity ISS
 biological_processGO:0045087 innate immune response NAS
 biological_processGO:0045747 positive regulation of Notch signaling pathway ISS
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0046330 positive regulation of JNK cascade IDA
 biological_processGO:0046645 positive regulation of gamma-delta T cell activation ISS
 biological_processGO:0050679 positive regulation of epithelial cell proliferation ISS
 biological_processGO:0050718 positive regulation of interleukin-1 beta secretion IEA
 biological_processGO:0050727 regulation of inflammatory response IC
 biological_processGO:0050871 positive regulation of B cell activation IDA
 biological_processGO:0051092 positive regulation of NF-kappaB transcription factor activity TAS
 biological_processGO:0051259 protein complex oligomerization TAS
 biological_processGO:0051353 positive regulation of oxidoreductase activity ISS
 biological_processGO:0051770 positive regulation of nitric-oxide synthase biosynthetic process ISS
 biological_processGO:0060585 positive regulation of prostaglandin-endoperoxide synthase activity ISS
 biological_processGO:0070374 positive regulation of ERK1 and ERK2 cascade ISS
 biological_processGO:0070423 nucleotide-binding oligomerization domain containing signaling pathway TAS
 biological_processGO:0070431 nucleotide-binding oligomerization domain containing 2 signaling pathway IDA
 biological_processGO:0070498 interleukin-1-mediated signaling pathway TAS
 biological_processGO:0071224 cellular response to peptidoglycan IEA
 biological_processGO:0071225 cellular response to muramyl dipeptide IMP
 biological_processGO:0071407 cellular response to organic cyclic compound IEA
 biological_processGO:1900017 positive regulation of cytokine production involved in inflammatory response IDA
 biological_processGO:1901224 positive regulation of NIK/NF-kappaB signaling IMP
 biological_processGO:1902523 positive regulation of protein K63-linked ubiquitination IMP
 biological_processGO:2000110 negative regulation of macrophage apoptotic process ISS
 biological_processGO:2000363 positive regulation of prostaglandin-E synthase activity ISS
 cellular_componentGO:0005737 cytoplasm TAS
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005794 Golgi apparatus IDA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005856 cytoskeleton IDA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0008180 COP9 signalosome IDA
 cellular_componentGO:0009986 cell surface IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016323 basolateral plasma membrane IEA
 cellular_componentGO:0031982 vesicle IDA
 cellular_componentGO:0032991 protein-containing complex IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003779 actin binding IDA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0019899 enzyme binding IPI
 molecular_functionGO:0019901 protein kinase binding IPI
 molecular_functionGO:0030544 Hsp70 protein binding IPI
 molecular_functionGO:0032500 muramyl dipeptide binding IDA
 molecular_functionGO:0042834 peptidoglycan binding IDA
 molecular_functionGO:0050700 CARD domain binding IPI
 molecular_functionGO:0051879 Hsp90 protein binding IDA


Pathways (from Reactome)
Pathway description
NOD1/2 Signaling Pathway
TAK1 activates NFkB by phosphorylation and activation of IKKs complex
activated TAK1 mediates p38 MAPK activation
JNK (c-Jun kinases) phosphorylation and activation mediated by activated human TAK1
Ovarian tumor domain proteases
Interleukin-1 signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000112 Nephropathy "A nonspecific term referring to disease or damage of the kidneys." [HPO:curators]
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 HP:0000217 Xerostomia "Dryness of the mouth due to salivary gland dysfunction." [HPO:curators]
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 HP:0000488 Retinopathy 
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 HP:0000491 Keratitis "Inflammation of the cornea." [HPO:curators]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000554 Uveitis "Inflammation of one or all portions of the uveal tract." [HPO:curators]
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 HP:0000572 Visual loss 
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 HP:0000585 Band keratopathy "An `abnormality of the cornea` (HP:0000481) characterized by the deposition of calcium in a band across the central cornea, leading to decreased vision, foreign body sensation, and ocular irritation." [HPO:probinson]
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 HP:0000598 Abnormality of the ears 
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 HP:0000610 Abnormality of the choroid 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000953 Hyperpigmentation 
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 HP:0000958 Dry skin 
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 HP:0000964 Eczema "Eczema is a form of dermatitis. The term eczema is broadly applied to a range of persistent skin conditions and can be related to a number of underlying conditions. Manifestations of eczema can include dryness and recurring skin rashes with redness, skin edema, itching and dryness, crusting, flaking, blistering, cracking, oozing, or bleeding." [HPO:curators]
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 HP:0000988 Skin rash 
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 HP:0001094 Iridocyclitis 
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 HP:0001101 Iritis 
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 HP:0001291 Abnormality of the cranial nerves "Abnormality affecting one or more of the cranial nerves, which emerge directly from the brain stem." [HPO:curators.]
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 HP:0001369 Arthritis 
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 HP:0001376 Decreased mobility of joints 
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 HP:0001386 Joint swelling 
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 HP:0001392 Abnormality of the liver 
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 HP:0001701 Pericarditis 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001903 Anemia 
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 HP:0001945 Fever 
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 HP:0002092 Pulmonary hypertension 
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 HP:0002094 Dyspnea 
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 HP:0002716 Lymphadenopathy 
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 HP:0002829 Arthralgia 
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 HP:0003774 End stage renal disease 
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 HP:0004942 Aortic aneurysms 
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 HP:0005310 Small and large vessel vasculitis 
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 HP:0005764 Polyarticular arthritis 
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 HP:0005830 Partial flexion contractures of fingers and toes 
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 HP:0006770 Sporadic, nonpapillary renal cell carcinoma 
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 HP:0007432 Intermittent generalized erythematous papular rash 
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 HP:0007813 Nongranulomatous uveitis 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008064 Ichthyosiform abnormality of the skin 
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 HP:0010286 Abnormality of the salivary glands "Any abnormality of the salivary glands, the exocrine glands that produce saliva." [HPO:curators]
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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 HP:0010783 Erythema "Redness of the skin, caused by hyperemia of the capillaries in the lower layers of the skin." [HPO:probinson]
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 HP:0011505 Cystoid macular edema "Cystoid macular edema (CME) is any type of macular edema that involves cyst formation." [DDD:ncarter]
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 HP:0012123 Posterior uveitis "Inflammation of the uveal tract in which the primary site of inflammation is the retina or choroid." [HPO:probinson]
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 HP:0012219 Erythema nodosum "An erythematous eruption commonly associated with drug reactions or infection and characterized by inflammatory nodules that are usually tender, multiple, and bilateral." [HPO:probinson]
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 HP:0025230 Tendonitis "Inflammation of a tendon." []
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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 HP:0100654 Retrobulbar optic neuritis "`Optic neuritis`(HP:0100653) that occurs in the section of the optic nerve located behind the eyebal." [HPO:sdoelken]
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 HP:0100769 Synovitis 
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 HP:0200034 skin papules "A circumscribed, solid elevation of skin with no visible fluid, varying in size from a pinhead to less than 10mm in diameter at the widest point." [HPO:SKOEHLER]
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 HP:0200042 skin ulcer "A discontinuity of the skin exhibiting complete loss of the epidermis and often portions of the dermis and even subcutaneous fat." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000104312 RIPK2 / O43353 / receptor interacting serine/threonine kinase 2  / complex / reaction
 ENSG00000118503 P21580 / TNFAIP3 / TNF alpha induced protein 3  / reaction
 ENSG00000100324 TAB1 / Q15750 / TGF-beta activated kinase 1 (MAP3K7) binding protein 1  / reaction / complex
 ENSG00000269335 IKBKG / Q9Y6K9 / inhibitor of nuclear factor kappa B kinase subunit gamma  / reaction / complex
 ENSG00000157625 TAB3 / Q8N5C8 / TGF-beta activated kinase 1 and MAP3K7 binding protein 3  / reaction / complex
 ENSG00000167207 NOD2 / Q9HC29 / nucleotide binding oligomerization domain containing 2  / reaction / complex
 ENSG00000055208 TAB2 / Q9NYJ8 / TGF-beta activated kinase 1/MAP3K7 binding protein 2  / complex / reaction
 ENSG00000135341 MAP3K7 / O43318 / mitogen-activated protein kinase kinase kinase 7  / complex / reaction
 ENSG00000187796 CARD9 / Q9H257 / caspase recruitment domain family member 9  / complex / reaction
 ENSG00000083799 CYLD / Q9NQC7 / CYLD lysine 63 deubiquitinase  / reaction






 

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