ENSDARG00000029885


Danio rerio

Features
Gene ID: ENSDARG00000029885
  
Biological name :rab41
  
Synonyms : rab41 / RAB41, member RAS oncogene family
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 33280718
Gene end: 33297318
  
Corresponding Affymetrix probe sets: Dr.19739.1.S1_at (Zebrafish Array)   Dr.6977.1.A1_at (Zebrafish Array)   NM_213365_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000069541
Ensembl peptide - ENSDARP00000117395
Ensembl peptide - ENSDARP00000045554
NCBI entrez gene - 406674     See in Manteia.
RefSeq - NM_213365
RefSeq - XM_005173245
RefSeq - XM_005173246
RefSeq - XM_005173247
RefSeq Peptide - NP_998530
swissprot - Q4V957
swissprot - E9QE54
swissprot - A8KBS0
ZFIN ID - ZDB-GENE-040426-2686
Ensembl - ENSDARG00000029885
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RAB6BENSGALG00000026278Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rab6a / RAB6A, member RAS oncogene family / RAB6C* / RAB6D* / P20340* / Q9H0N0* / P35279* / RAB6C, member RAS oncogene family* / RAB6D, member RAS oncogene family*ENSDARG0000010371487
rab6ba / RAB6B, member RAS oncogene family a / RAB6B* / Q9NRW1* / P61294* / RAB6B, member RAS oncogene family*ENSDARG0000003452284
rab6bb / RAB6B, member RAS oncogene family b / RAB6B* / Q9NRW1* / P61294* / RAB6B, member RAS oncogene family*ENSDARG0000003134382
rab34b / RAB34, member RAS oncogene family b / RAB34* / Q9BZG1* / P0DI83* / RAB34, member RAS oncogene family*ENSDARG0000001097734
rab34a / RAB34, member RAS oncogene family a / RAB34* / Q9BZG1* / P0DI83* / RAB34, member RAS oncogene family*ENSDARG0000004562834
rab36 / RAB36, member RAS oncogene family / O95755* / Q8CAM5* / Mus musculus RAB36, member RAS onco family (Rab36), transcript variant 1, mRNA.*ENSDARG0000001405831


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006890 retrograde vesicle-mediated transport, Golgi to ER IBA
 biological_processGO:0006891 intra-Golgi vesicle-mediated transport IBA
 biological_processGO:0042147 retrograde transport, endosome to Golgi IBA
 cellular_componentGO:0005794 Golgi apparatus IBA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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