ENSDARG00000034522


Danio rerio

Features
Gene ID: ENSDARG00000034522
  
Biological name :rab6ba
  
Synonyms : rab6ba / RAB6B, member RAS oncogene family a
  
Possible biological names infered from orthology : P61294 / Q9NRW1 / RAB6B / RAB6B, member RAS oncogene family
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 27667359
Gene end: 27900013
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000138043
Ensembl peptide - ENSDARP00000049176
Ensembl peptide - ENSDARP00000147728
NCBI entrez gene - 558900     See in Manteia.
RefSeq - NM_001034179
RefSeq - XM_005165932
RefSeq Peptide - NP_001029351
swissprot - F1RDG8
swissprot - A0A0R4IT88
ZFIN ID - ZDB-GENE-050809-136
Ensembl - ENSDARG00000034522
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RAB6BENSG00000154917Homo sapiens
 Rab6bENSMUSG00000032549Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rab6bb / RAB6B, member RAS oncogene family b / RAB6B* / Q9NRW1* / P61294* / RAB6B, member RAS oncogene family*ENSDARG0000003134388
rab6a / RAB6A, member RAS oncogene family / RAB6C* / RAB6D* / P20340* / Q9H0N0* / P35279* / RAB6C, member RAS oncogene family* / RAB6D, member RAS oncogene family*ENSDARG0000010371487
rab41 / RAB41, member RAS oncogene familyENSDARG0000002988582
rab34a / RAB34, member RAS oncogene family a / RAB34* / Q9BZG1* / P0DI83* / RAB34, member RAS oncogene family*ENSDARG0000004562833
rab34b / RAB34, member RAS oncogene family b / RAB34* / Q9BZG1* / P0DI83* / RAB34, member RAS oncogene family*ENSDARG0000001097733
rab36 / RAB36, member RAS oncogene family / O95755* / Q8CAM5* / Mus musculus RAB36, member RAS onco family (Rab36), transcript variant 1, mRNA.*ENSDARG0000001405832


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006890 retrograde vesicle-mediated transport, Golgi to ER IBA
 biological_processGO:0006891 intra-Golgi vesicle-mediated transport IBA
 biological_processGO:0042147 retrograde transport, endosome to Golgi IBA
 cellular_componentGO:0005794 Golgi apparatus IBA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
COPI-independent Golgi-to-ER retrograde traffic
Retrograde transport at the Trans-Golgi-Network
TBC/RABGAPs
RAB geranylgeranylation
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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