ENSDARG00000031343


Danio rerio

Features
Gene ID: ENSDARG00000031343
  
Biological name :rab6bb
  
Synonyms : rab6bb / RAB6B, member RAS oncogene family b
  
Possible biological names infered from orthology : P61294 / Q9NRW1 / RAB6B / RAB6B, member RAS oncogene family
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 22795494
Gene end: 22803665
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000042254
NCBI entrez gene - 541339     See in Manteia.
swissprot - Q5BJD1
ZFIN ID - ZDB-GENE-050320-28
Ensembl - ENSDARG00000031343
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RAB6BENSG00000154917Homo sapiens
 Rab6bENSMUSG00000032549Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rab6ba / RAB6B, member RAS oncogene family a / RAB6B* / Q9NRW1* / P61294* / RAB6B, member RAS oncogene family*ENSDARG0000003452291
rab6a / RAB6A, member RAS oncogene family / RAB6C* / RAB6D* / P20340* / Q9H0N0* / P35279* / RAB6C, member RAS oncogene family* / RAB6D, member RAS oncogene family*ENSDARG0000010371487
rab41 / RAB41, member RAS oncogene familyENSDARG0000002988583
rab34b / RAB34, member RAS oncogene family b / RAB34* / Q9BZG1* / P0DI83* / RAB34, member RAS oncogene family*ENSDARG0000001097734
rab36 / RAB36, member RAS oncogene family / O95755* / Q8CAM5* / Mus musculus RAB36, member RAS onco family (Rab36), transcript variant 1, mRNA.*ENSDARG0000001405833
rab34a / RAB34, member RAS oncogene family a / RAB34* / Q9BZG1* / P0DI83* / RAB34, member RAS oncogene family*ENSDARG0000004562833


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006890 retrograde vesicle-mediated transport, Golgi to ER IBA
 biological_processGO:0006891 intra-Golgi vesicle-mediated transport IBA
 biological_processGO:0042147 retrograde transport, endosome to Golgi IBA
 cellular_componentGO:0005794 Golgi apparatus IBA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
COPI-independent Golgi-to-ER retrograde traffic
Retrograde transport at the Trans-Golgi-Network
TBC/RABGAPs
RAB geranylgeranylation
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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