ENSDARG00000030311


Danio rerio

Features
Gene ID: ENSDARG00000030311
  
Biological name :tmc2b
  
Synonyms : F1QZE9 / tmc2b / transmembrane channel-like 2b
  
Possible biological names infered from orthology : Q8R4P4 / Q8TDI7 / TMC2 / transmembrane channel like 2 / Transmembrane channel-like protein 2
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 25624819
Gene end: 25645593
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000044470
Ensembl peptide - ENSDARP00000122551
NCBI entrez gene - 567304     See in Manteia.
RefSeq - NM_001302223
RefSeq Peptide - NP_001289152
swissprot - F1QZE9
ZFIN ID - ZDB-GENE-060526-262
Ensembl - ENSDARG00000030311
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TMC2ENSGALG00000042706Gallus gallus
 TMC2ENSG00000149488Homo sapiens
 Tmc2ENSMUSG00000060332Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tmc2a / E7FFT2 / transmembrane channel-like 2a / TMC2* / Q8TDI7* / Q8R4P4* / transmembrane channel like 2* / Transmembrane channel-like protein 2 *ENSDARG0000003310471
tmc1 / F1QFU0 / transmembrane channel-like 1 / Q8TDI8* / Q8R4P5* / Transmembrane channel-like protein 1 *ENSDARG0000005638654
tmc8 / transmembrane channel-like 8 / Q7TN58* / Q8IU68* / Transmembrane channel-like protein 8 *ENSDARG0000010105017
tmc4 / transmembrane channel-like 4ENSDARG0000003175717
si:dkey-202l16.5 / TMC5* / Q6UXY8* / Q32NZ6* / transmembrane channel like 5* / Transmembrane channel-like protein 5 *ENSDARG0000001325216
tmc6a / transmembrane channel-like 6a / TMC6* / Q7Z403* / transmembrane channel like 6*ENSDARG0000006978715
si:dkey-15b23.3 / TMC3* / Q7Z5M5* / transmembrane channel like 3*ENSDARG000000906969


Protein motifs (from Interpro)
Interpro ID Name
 IPR011989  Armadillo-like helical
 IPR012496  TMC domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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