ENSDARG00000013252


Danio rerio

Features
Gene ID: ENSDARG00000013252
  
Biological name :si:dkey-202l16.5
  
Synonyms : si:dkey-202l16.5
  
Possible biological names infered from orthology : Q32NZ6 / Q6UXY8 / TMC5 / transmembrane channel like 5 / Transmembrane channel-like protein 5
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 26734162
Gene end: 26751819
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000101972
NCBI entrez gene - 561497     See in Manteia.
RefSeq - XM_005163920
swissprot - E7FDU7
ZFIN ID - ZDB-GENE-120411-6
Ensembl - ENSDARG00000013252
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TMC5ENSGALG00000006911Gallus gallus
 TMC5ENSG00000103534Homo sapiens
 Tmc5ENSMUSG00000030650Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tmc6a / transmembrane channel-like 6a / TMC6* / Q7Z403* / transmembrane channel like 6*ENSDARG0000006978730
tmc4 / transmembrane channel-like 4ENSDARG0000003175723
tmc2a / E7FFT2 / transmembrane channel-like 2a / TMC2* / Q8TDI7* / Q8R4P4* / transmembrane channel like 2* / Transmembrane channel-like protein 2 *ENSDARG0000003310421
tmc2b / F1QZE9 / transmembrane channel-like 2b / TMC2* / Q8TDI7* / Q8R4P4* / transmembrane channel like 2* / Transmembrane channel-like protein 2 *ENSDARG0000003031121
tmc1 / F1QFU0 / transmembrane channel-like 1 / Q8TDI8* / Q8R4P5* / Transmembrane channel-like protein 1 *ENSDARG0000005638620
tmc8 / transmembrane channel-like 8 / Q7TN58* / Q8IU68* / Transmembrane channel-like protein 8 *ENSDARG0000010105019
si:dkey-15b23.3 / TMC3* / Q7Z5M5* / transmembrane channel like 3*ENSDARG000000906966


Protein motifs (from Interpro)
Interpro ID Name
 IPR012496  TMC domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003341 cilium movement IMP
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000001 Kupffer s vesicle Kupffers vesicle cilium movement decreased frequency , abnormal
Kupffers vesicle motile cilium decreased amount , abnormal
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 ZFA:0000151 pronephros pronephros cystic , abnormal
Show

 ZFA:0001094 whole organism whole organism anterior-posterior axis curved , abnormal
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 ZFA:0001261 ventricular system ventricular system hydrocephalic , abnormal
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 ZFA:0001617 otolith otolith morphology , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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