ENSDARG00000033104


Danio rerio

Features
Gene ID: ENSDARG00000033104
  
Biological name :tmc2a
  
Synonyms : E7FFT2 / tmc2a / transmembrane channel-like 2a
  
Possible biological names infered from orthology : Q8R4P4 / Q8TDI7 / TMC2 / transmembrane channel like 2 / Transmembrane channel-like protein 2
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 55221593
Gene end: 55251994
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000117851
Ensembl peptide - ENSDARP00000068128
NCBI entrez gene - 571240     See in Manteia.
RefSeq - NM_001302237
RefSeq Peptide - NP_001289166
swissprot - E7FFT2
ZFIN ID - ZDB-GENE-060526-280
Ensembl - ENSDARG00000033104
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TMC2ENSGALG00000042706Gallus gallus
 TMC2ENSG00000149488Homo sapiens
 Tmc2ENSMUSG00000060332Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tmc2b / F1QZE9 / transmembrane channel-like 2b / TMC2* / Q8TDI7* / Q8R4P4* / transmembrane channel like 2* / Transmembrane channel-like protein 2 *ENSDARG0000003031169
tmc1 / F1QFU0 / transmembrane channel-like 1 / Q8TDI8* / Q8R4P5* / Transmembrane channel-like protein 1 *ENSDARG0000005638652
tmc4 / transmembrane channel-like 4ENSDARG0000003175716
si:dkey-202l16.5 / TMC5* / Q6UXY8* / Q32NZ6* / transmembrane channel like 5* / Transmembrane channel-like protein 5 *ENSDARG0000001325216
tmc6a / transmembrane channel-like 6a / TMC6* / Q7Z403* / transmembrane channel like 6*ENSDARG0000006978715
tmc8 / transmembrane channel-like 8 / Q7TN58* / Q8IU68* / Transmembrane channel-like protein 8 *ENSDARG0000010105015
si:dkey-15b23.3 / TMC3* / Q7Z5M5* / transmembrane channel like 3*ENSDARG000000906969


Protein motifs (from Interpro)
Interpro ID Name
 IPR012496  TMC domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0050910 detection of mechanical stimulus involved in sensory perception of sound IGI
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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