ENSDARG00000031434


Danio rerio

Features
Gene ID: ENSDARG00000031434
  
Biological name :rcor1
  
Synonyms : rcor1 / REST corepressor 1
  
Possible biological names infered from orthology : Q8CFE3 / Q9UKL0
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 29251662
Gene end: 29271359
  
Corresponding Affymetrix probe sets: Dr.17938.1.S1_at (Zebrafish Array)   Dr.17938.2.A1_at (Zebrafish Array)   NM_001080041_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000094994
NCBI entrez gene - 569294     See in Manteia.
RefSeq - NM_001080041
RefSeq Peptide - NP_001073510
swissprot - Q1MTF5
ZFIN ID - ZDB-GENE-050506-79
Ensembl - ENSDARG00000031434
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RCOR1ENSGALG00000011384Gallus gallus
 RCOR1ENSG00000089902Homo sapiens
 Rcor1ENSMUSG00000037896Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rcor3 / REST corepressor 3 / Q6PGA0* / Q9P2K3*ENSDARG0000000450255
rcor2 / Q6P116 / REST corepressor 2 / Q8C796* / Q8IZ40*ENSDARG0000000827849
ncor1 / nuclear receptor corepressor 1 / O75376* / nuclear receptor co-repressor 1*ENSDARG0000003528520
ncor2 / nuclear receptor corepressor 2 / Q9WU42* / Q9Y618*ENSDARG0000000096618


Protein motifs (from Interpro)
Interpro ID Name
 IPR000949  ELM2 domain
 IPR001005  SANT/Myb domain
 IPR009057  Homeobox-like domain superfamily
 IPR017884  SANT domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IBA
 biological_processGO:0030097 hemopoiesis IMP
 biological_processGO:1900052 regulation of retinoic acid biosynthetic process IGI
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005667 transcription factor complex IBA
 cellular_componentGO:0017053 transcriptional repressor complex IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0003714 transcription corepressor activity IBA
 molecular_functionGO:0008134 transcription factor binding IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA


Pathways (from Reactome)
Pathway description
Factors involved in megakaryocyte development and platelet production


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000094 blood island blood island has fewer parts of type neutrophil , abnormal
blood island has extra parts of type hematopoietic stem cell , abnormal
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 ZFA:0000152 retina retina immature , abnormal
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 ZFA:0005028 ventral wall of dorsal aorta ventral wall of dorsal aorta has fewer parts of type hematopoietic stem cell , abnormal
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 ZFA:0009046 T cell T cell decreased amount , abnormal
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 ZFA:0009323 thrombocyte thrombocyte decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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