ENSDARG00000038964


Danio rerio

Features
Gene ID: ENSDARG00000038964
  
Biological name :traf4b
  
Synonyms : tnf receptor-associated factor 4b / traf4b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 39005905
Gene end: 39024754
  
Corresponding Affymetrix probe sets: Dr.15893.1.A1_at (Zebrafish Array)   NM_212817_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000056877
NCBI entrez gene - 404035     See in Manteia.
RefSeq - NM_212817
RefSeq Peptide - NP_997982
swissprot - Q7T1K1
ZFIN ID - ZDB-GENE-040305-2
Ensembl - ENSDARG00000038964
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
traf4a / tnf receptor-associated factor 4a / TRAF4* / Q61382* / Q9BUZ4* / TNF receptor associated factor 4*ENSDARG0000000396373
traf3 / TNF receptor-associated factor 3 / Q13114* / Q60803*ENSDARG0000002200028
traf2b / Tnf receptor-associated factor 2bENSDARG0000010103628
traf2a / Tnf receptor-associated factor 2a / TRAF2* / P39429* / Q12933* / TNF receptor associated factor 2*ENSDARG0000003017327
traf6 / Q6IWL4 / TNF receptor-associated factor 6 / P70196* / Q9Y4K3*ENSDARG0000002805823
traf1 / TNF receptor-associated factor 1 / P39428* / Q13077*ENSDARG0000006948223
unm_sa808 / un-named sa808 / TRAF2* / Q12933* / TNF receptor associated factor 2*ENSDARG0000007837815
traf5 / Tnf receptor-associated factor 5 / O00463*ENSDARG0000001724014


Protein motifs (from Interpro)
Interpro ID Name
 IPR001293  Zinc finger, TRAF-type
 IPR001841  Zinc finger, RING-type
 IPR002083  MATH/TRAF domain
 IPR003613  U box domain
 IPR008974  TRAF-like
 IPR012227  TNF receptor-associated factor TRAF
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR018957  Zinc finger, C3HC4 RING-type
 IPR027138  TNF receptor-associated factor 4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007250 activation of NF-kappaB-inducing kinase activity IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0042981 regulation of apoptotic process IEA
 biological_processGO:0046330 positive regulation of JNK cascade IEA
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr