ENSDARG00000003963


Danio rerio

Features
Gene ID: ENSDARG00000003963
  
Biological name :traf4a
  
Synonyms : tnf receptor-associated factor 4a / traf4a
  
Possible biological names infered from orthology : Q61382 / Q9BUZ4 / TNF receptor associated factor 4 / TRAF4
  
Species: Danio rerio
  
Chr. number: 15
Strand: 1
Band:
Gene start: 15516612
Gene end: 15593263
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000013849
NCBI entrez gene - 404045     See in Manteia.
RefSeq - NM_205762
RefSeq Peptide - NP_991325
swissprot - Q7T1K2
ZFIN ID - ZDB-GENE-040308-1
Ensembl - ENSDARG00000003963
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRAF4ENSGALG00000003987Gallus gallus
 TRAF4ENSG00000076604Homo sapiens
 Traf4ENSMUSG00000017386Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
traf4b / tnf receptor-associated factor 4bENSDARG0000003896474
traf3 / TNF receptor-associated factor 3 / Q13114* / Q60803*ENSDARG0000002200029
traf2b / Tnf receptor-associated factor 2bENSDARG0000010103629
traf2a / Tnf receptor-associated factor 2a / TRAF2* / P39429* / Q12933* / TNF receptor associated factor 2*ENSDARG0000003017329
traf1 / TNF receptor-associated factor 1 / P39428* / Q13077*ENSDARG0000006948224
traf6 / Q6IWL4 / TNF receptor-associated factor 6 / P70196* / Q9Y4K3*ENSDARG0000002805823
unm_sa808 / un-named sa808 / TRAF2* / Q12933* / TNF receptor associated factor 2*ENSDARG0000007837815
traf5 / Tnf receptor-associated factor 5 / O00463*ENSDARG0000001724013


Protein motifs (from Interpro)
Interpro ID Name
 IPR001293  Zinc finger, TRAF-type
 IPR001841  Zinc finger, RING-type
 IPR002083  MATH/TRAF domain
 IPR008974  TRAF-like
 IPR012227  TNF receptor-associated factor TRAF
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027138  TNF receptor-associated factor 4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007250 activation of NF-kappaB-inducing kinase activity IEA
 biological_processGO:0042981 regulation of apoptotic process IEA
 biological_processGO:0046330 positive regulation of JNK cascade IEA
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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