ENSDARG00000041205


Danio rerio

Features
Gene ID: ENSDARG00000041205
  
Biological name :slc6a1l
  
Synonyms : slc6a1l / solute carrier family 6 (neurotransmitter transporter, GABA), member 1, like
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 4
Strand: 1
Band:
Gene start: 26972862
Gene end: 27079859
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000009915
Ensembl peptide - ENSDARP00000114726
NCBI entrez gene - 568985     See in Manteia.
swissprot - F1QFP6
swissprot - F1QZL5
ZFIN ID - ZDB-GENE-041210-296
Ensembl - ENSDARG00000041205
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000019291Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
slc6a1b / solute carrier family 6 (neurotransmitter transporter), member 1b / P31648* / SLC6A1* / P30531* / solute carrier family 6 member 1* / Sodium- and chloride-dependent GABA transporter 1 *ENSDARG0000003964773
slc6a1a / solute carrier family 6 (neurotransmitter transporter), member 1a / P31648* / SLC6A1* / P30531* / solute carrier family 6 member 1* / Sodium- and chloride-dependent GABA transporter 1 *ENSDARG0000004594473
SLC6A13 / solute carrier family 6 member 13 / Q9NSD5*ENSDARG0000006756752
slc6a11b / solute carrier family 6 (neurotransmitter transporter), member 11b / P48066* / P31650* / SLC6A11* / solute carrier family 6 member 11* / Sodium- and chloride-dependent GABA transporter 3 *ENSDARG0000008798149
slc6a8 / solute carrier family 6 (neurotransmitter transporter), member 8 / Q8VBW1* / P48029* / solute carrier family 6 member 8* / solute carrier family 6 (neurotransmitter transporter, cr...ENSDARG0000004364649
slc6a6b / solute carrier family 6 (neurotransmitter transporter), member 6b / P31641* / SLC6A6* / solute carrier family 6 member 6*ENSDARG0000009843849
si:ch211-117c9.5ENSDARG0000007123549
slc6a11a / solute carrier family 6 (neurotransmitter transporter), member 11aENSDARG0000007400248
slc6a6a / solute carrier family 6 (neurotransmitter transporter), member 6a / P31641* / SLC6A6* / O35316* / solute carrier family 6 member 6* / solute carrier family 6 (neurotransmitter tra...ENSDARG0000001253448
slc6a22.1 / solute carrier family 6 member 22, tandem duplicate 1ENSDARG0000000073047
si:ch211-132b12.2ENSDARG0000009494647
si:ch211-132b12.6ENSDARG0000009454647
slc6a22.2 / solute carrier family 6 member 22, tandem duplicate 2ENSDARG0000000135447
si:ch211-132b12.3ENSDARG0000006836346
si:ch211-132b12.1ENSDARG0000006148046
zgc:158427ENSDARG0000006837246
slc6a5 / solute carrier family 6 (neurotransmitter transporter), member 5 / Q9Y345* / solute carrier family 6 member 5* / solute carrier family 6 (neurotransmitter transporter, glycine), member 5*ENSDARG0000006796445
slc6a9 / solute carrier family 6 (neurotransmitter transporter, glycine), member 9 / P48067* / P28571* / solute carrier family 6 member 9* / Sodium- and chloride-dependent glycine transporter 1 *ENSDARG0000001853441
slc6a2 / solute carrier family 6 (neurotransmitter transporter), member 2 / P23975* / O55192* / solute carrier family 6 member 2* / solute carrier family 6 (neurotransmitter transporter, no...ENSDARG0000001614141
zgc:158225 / Q99884* / SLC6A7* / Q6PGE7* / solute carrier family 6 member 7* / Sodium-dependent proline transporter *ENSDARG0000003000641


Protein motifs (from Interpro)
Interpro ID Name
 IPR000175  Sodium:neurotransmitter symporter
 IPR002980  Sodium:neurotransmitter symporter, GABA, GAT-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006836 neurotransmitter transport IEA
 biological_processGO:0007268 chemical synaptic transmission IBA
 biological_processGO:0015812 gamma-aminobutyric acid transport IBA
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0005887 integral component of plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0043005 neuron projection IBA
 molecular_functionGO:0005328 neurotransmitter:sodium symporter activity IEA
 molecular_functionGO:0005332 gamma-aminobutyric acid:sodium symporter activity IBA
 molecular_functionGO:0015293 symporter activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr