ENSDARG00000018534


Danio rerio

Features
Gene ID: ENSDARG00000018534
  
Biological name :slc6a9
  
Synonyms : slc6a9 / solute carrier family 6 (neurotransmitter transporter, glycine), member 9
  
Possible biological names infered from orthology : P28571 / P48067 / Sodium- and chloride-dependent glycine transporter 1 / solute carrier family 6 member 9
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 33335911
Gene end: 33422798
  
Corresponding Affymetrix probe sets: Dr.18130.1.S1_at (Zebrafish Array)   Dr.5485.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000149753
Ensembl peptide - ENSDARP00000071929
Ensembl peptide - ENSDARP00000089601
Ensembl peptide - ENSDARP00000111044
Ensembl peptide - ENSDARP00000112693
NCBI entrez gene - 494490     See in Manteia.
RefSeq - NM_001030073
RefSeq - XM_005163494
RefSeq - XM_005163495
RefSeq Peptide - NP_001025244
swissprot - Q4FIV5
swissprot - Q4FIV6
swissprot - Q4FIV7
swissprot - A8WHY8
ZFIN ID - ZDB-GENE-050105-3
Ensembl - ENSDARG00000018534
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SLC6A9ENSGALG00000010098Gallus gallus
 P48067ENSG00000196517Homo sapiens
 P28571ENSMUSG00000028542Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
slc6a5 / solute carrier family 6 (neurotransmitter transporter), member 5 / Q9Y345* / solute carrier family 6 member 5* / solute carrier family 6 (neurotransmitter transporter, glycine), member 5*ENSDARG0000006796447
zgc:158225 / Q99884* / SLC6A7* / Q6PGE7* / solute carrier family 6 member 7* / Sodium-dependent proline transporter *ENSDARG0000003000641
slc6a14 / solute carrier family 6 (amino acid transporter), member 14 / Q9UN76* / Q9JMA9* / solute carrier family 6 member 14* / Sodium- and chloride-dependent neutral and basic amino acid ...ENSDARG0000002986641
slc6a11b / solute carrier family 6 (neurotransmitter transporter), member 11b / P48066* / P31650* / SLC6A11* / solute carrier family 6 member 11* / Sodium- and chloride-dependent GABA transporter 3 *ENSDARG0000008798138
slc6a1b / solute carrier family 6 (neurotransmitter transporter), member 1b / P31648* / SLC6A1* / P30531* / solute carrier family 6 member 1* / Sodium- and chloride-dependent GABA transporter 1 *ENSDARG0000003964738
slc6a1a / solute carrier family 6 (neurotransmitter transporter), member 1a / P31648* / SLC6A1* / P30531* / solute carrier family 6 member 1* / Sodium- and chloride-dependent GABA transporter 1 *ENSDARG0000004594438
SLC6A13 / solute carrier family 6 member 13 / Q9NSD5*ENSDARG0000006756738
slc6a22.2 / solute carrier family 6 member 22, tandem duplicate 2ENSDARG0000000135437
slc6a8 / solute carrier family 6 (neurotransmitter transporter), member 8 / Q8VBW1* / P48029* / solute carrier family 6 member 8* / solute carrier family 6 (neurotransmitter transporter, cr...ENSDARG0000004364637
slc6a1l / solute carrier family 6 (neurotransmitter transporter, GABA), member 1, likeENSDARG0000004120536
slc6a2 / solute carrier family 6 (neurotransmitter transporter), member 2 / P23975* / O55192* / solute carrier family 6 member 2* / solute carrier family 6 (neurotransmitter transporter, no...ENSDARG0000001614136
slc6a11a / solute carrier family 6 (neurotransmitter transporter), member 11aENSDARG0000007400236
slc6a6b / solute carrier family 6 (neurotransmitter transporter), member 6b / P31641* / SLC6A6* / solute carrier family 6 member 6*ENSDARG0000009843835
si:ch211-117c9.5ENSDARG0000007123535
slc6a6a / solute carrier family 6 (neurotransmitter transporter), member 6a / P31641* / SLC6A6* / O35316* / solute carrier family 6 member 6* / solute carrier family 6 (neurotransmitter tra...ENSDARG0000001253435
si:ch211-132b12.6ENSDARG0000009454634
slc6a4b / solute carrier family 6 (neurotransmitter transporter), member 4bENSDARG0000005701734
slc6a22.1 / solute carrier family 6 member 22, tandem duplicate 1ENSDARG0000000073034
si:ch211-132b12.3ENSDARG0000006836334
zgc:158427ENSDARG0000006837234


Protein motifs (from Interpro)
Interpro ID Name
 IPR000175  Sodium:neurotransmitter symporter
 IPR003028  Sodium:neurotransmitter symporter, glycine, type 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003333 amino acid transmembrane transport IEA
 biological_processGO:0006836 neurotransmitter transport IEA
 biological_processGO:0007626 locomotory behavior IMP
 biological_processGO:0015816 glycine transport IMP
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0060080 inhibitory postsynaptic potential IMP
 biological_processGO:0060092 regulation of synaptic transmission, glycinergic IMP
 biological_processGO:1903825 organic acid transmembrane transport IEA
 cellular_componentGO:0005887 integral component of plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0098794 postsynapse IEA
 molecular_functionGO:0005283 amino acid:sodium symporter activity IEA
 molecular_functionGO:0005328 neurotransmitter:sodium symporter activity IEA
 molecular_functionGO:0015187 glycine transmembrane transporter activity IDA
 molecular_functionGO:0015293 symporter activity IEA


Pathways (from Reactome)
Pathway description
Na+/Cl- dependent neurotransmitter transporters


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000108 fin fin necrotic , abnormal
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 ZFA:0001094 whole organism whole organism lethal (sensu genetics) , abnormal
whole organism viability , abnormal
whole organism decreased mobility , abnormal
Show

 ZFA:0001117 post-vent region post-vent region movement quality , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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