ENSG00000196517


Homo sapiens

Features
Gene ID: ENSG00000196517
  
Biological name :SLC6A9
  
Synonyms : P48067 / SLC6A9 / solute carrier family 6 member 9
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p34.1
Gene start: 43991500
Gene end: 44031467
  
Corresponding Affymetrix probe sets: 207043_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000361381
Ensembl peptide - ENSP00000361380
Ensembl peptide - ENSP00000361384
Ensembl peptide - ENSP00000435652
Ensembl peptide - ENSP00000434460
Ensembl peptide - ENSP00000433241
Ensembl peptide - ENSP00000350362
Ensembl peptide - ENSP00000353791
NCBI entrez gene - 6536     See in Manteia.
OMIM - 601019
RefSeq - XM_017002153
RefSeq - NM_001024845
RefSeq - NM_001261380
RefSeq - NM_001328629
RefSeq - NM_006934
RefSeq - NM_201649
RefSeq - XM_011542017
RefSeq - XM_017002151
RefSeq - XM_017002152
RefSeq Peptide - NP_001248309
RefSeq Peptide - NP_001315558
RefSeq Peptide - NP_008865
RefSeq Peptide - NP_964012
RefSeq Peptide - NP_001020016
swissprot - B7Z3A9
swissprot - P48067
swissprot - E9PLM5
swissprot - E9PJ65
swissprot - B7Z589
swissprot - J3KPA5
Ensembl - ENSG00000196517
  
Related genetic diseases (OMIM): 617301 - Glycine encephalopathy with normal serum glycine, 617301
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slc6a9ENSDARG00000018534Danio rerio
 SLC6A9ENSGALG00000010098Gallus gallus
 P28571ENSMUSG00000028542Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9Y345 / SLC6A5 / solute carrier family 6 member 5ENSG0000016597044
Q99884 / SLC6A7 / solute carrier family 6 member 7ENSG0000001108343
Q9UN76 / SLC6A14 / solute carrier family 6 member 14ENSG0000026810438
P48065 / SLC6A12 / solute carrier family 6 member 12ENSG0000011118136
Q9NSD5 / SLC6A13 / solute carrier family 6 member 13ENSG0000001037936
P48066 / SLC6A11 / solute carrier family 6 member 11ENSG0000013216435
P48029 / SLC6A8 / solute carrier family 6 member 8ENSG0000013082135
P30531 / SLC6A1 / solute carrier family 6 member 1ENSG0000015710335
P31641 / SLC6A6 / solute carrier family 6 member 6ENSG0000013138934
P23975 / SLC6A2 / solute carrier family 6 member 2ENSG0000010354634
Q01959 / SLC6A3 / solute carrier family 6 member 3ENSG0000014231934
P31645 / SLC6A4 / solute carrier family 6 member 4ENSG0000010857633


Protein motifs (from Interpro)
Interpro ID Name
 IPR000175  Sodium:neurotransmitter symporter
 IPR003028  Sodium:neurotransmitter symporter, glycine, type 1
 IPR037272  Sodium:neurotransmitter symporter superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003333 amino acid transmembrane transport IEA
 biological_processGO:0006836 neurotransmitter transport IEA
 biological_processGO:0006865 amino acid transport IEA
 biological_processGO:0015816 glycine transport IEA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0061537 glycine secretion, neurotransmission IEA
 biological_processGO:1903825 organic acid transmembrane transport IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0098793 presynapse IEA
 molecular_functionGO:0005215 transporter activity IBA
 molecular_functionGO:0005283 amino acid:sodium symporter activity IEA
 molecular_functionGO:0005328 neurotransmitter:sodium symporter activity IEA
 molecular_functionGO:0015187 glycine transmembrane transporter activity IEA
 molecular_functionGO:0015293 symporter activity IEA
 molecular_functionGO:0015375 glycine:sodium symporter activity TAS


Pathways (from Reactome)
Pathway description
Na+/Cl- dependent neurotransmitter transporters


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000243 Trigonocephaly 
Show

 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
Show

 HP:0000268 Dolichocephaly 
Show

 HP:0000278 Retrognathia 
Show

 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
Show

 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
Show

 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
Show

 HP:0000527 Long eyelashes "Mid upper eyelash length >10 mm or increased length of the eyelashes (subjective)." [pmid:19125427]
Show

 HP:0000648 Optic atrophy 
Show

 HP:0001188 Clenched hands 
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001276 Hypertonia 
Show

 HP:0001298 Encephalopathy 
Show

 HP:0001388 Joint laxity 
Show

 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
Show

 HP:0001845 Overriding toes "A congenital condition in which a toe is adducted, dorsifelxed, and medially deviated, generally lying over the metatarsal phalangeal joint of the adjacent toe. Usually, the fifth toe is affected." [HPO:curators]
Show

 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
Show

 HP:0002058 Myopathic facies "A facial appearance characteristic of myopathic conditions. The face appears expressionless with sunken cheeks, bilateral ptosis, and inability to elevate the corners of the mouth, due to muscle weakness." [HPO:curators]
Show

 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
Show

 HP:0002104 Apnea "Lack of breathing with no movement of the respiratory muscles and no exchange of air in the lungs. This term refers to a disposition to have recurrent episodes of apnea rather than to a single event." [HPO:curators]
Show

 HP:0002119 Ventriculomegaly 
Show

 HP:0002169 Clonus 
Show

 HP:0002267 Exaggerated startle response "An exaggerated startle reaction in response to a sudden unexpected visual or acoustic stimulus, or a quick movement near the face." [HPO:curators]
Show

 HP:0002804 Arthrogryposis multiplex congenita 
Show

 HP:0002816 Genu recurvatum 
Show

 HP:0002827 Dislocated hips 
Show

 HP:0002878 Early respiratory failure 
Show

 HP:0002987 Elbow contractures 
Show

 HP:0003273 Hip contractures 
Show

 HP:0003577 Onset at birth 
Show

 HP:0005280 Depressed nasal root and bridge 
Show

 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
Show

 HP:0025116 Fetal distress "An intrauterine state characterized by suboptimal values in the fetal heart rate, oxygenation of fetal blood, or other parameters indicative of compromise of the fetus. Signs of fetal distress include repetitive variable decelerations, fetal tachycardia or bradycardia, late decelerations, or low biophysical profile." []
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr