ENSG00000010379


Homo sapiens

Features
Gene ID: ENSG00000010379
  
Biological name :SLC6A13
  
Synonyms : Q9NSD5 / SLC6A13 / solute carrier family 6 member 13
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: -1
Band: p13.33
Gene start: 220621
Gene end: 262873
  
Corresponding Affymetrix probe sets: 207184_at (Human Genome U133 Plus 2.0 Array)   237058_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000444606
Ensembl peptide - ENSP00000437386
Ensembl peptide - ENSP00000443466
Ensembl peptide - ENSP00000339260
Ensembl peptide - ENSP00000389316
Ensembl peptide - ENSP00000407104
NCBI entrez gene - 6540     See in Manteia.
OMIM - 615097
RefSeq - XM_017019845
RefSeq - XM_006719008
RefSeq - XM_011521012
RefSeq - XM_011521013
RefSeq - XM_011521014
RefSeq - XM_017019842
RefSeq - XM_017019843
RefSeq - XM_017019844
RefSeq - NM_001190997
RefSeq - NM_001243392
RefSeq - NM_016615
RefSeq Peptide - NP_057699
RefSeq Peptide - NP_001177926
RefSeq Peptide - NP_001230321
swissprot - F5GZA5
swissprot - Q9NSD5
swissprot - F5H6S9
swissprot - F5H5D9
Ensembl - ENSG00000010379
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SLC6A13ENSDARG00000067567Danio rerio
 SLC6A13ENSGALG00000012985Gallus gallus
 P31649ENSMUSG00000030108Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P48065 / SLC6A12 / solute carrier family 6 member 12ENSG0000011118170
P48066 / SLC6A11 / solute carrier family 6 member 11ENSG0000013216468
P31641 / SLC6A6 / solute carrier family 6 member 6ENSG0000013138961
P48029 / SLC6A8 / solute carrier family 6 member 8ENSG0000013082154
P30531 / SLC6A1 / solute carrier family 6 member 1ENSG0000015710351
Q99884 / SLC6A7 / solute carrier family 6 member 7ENSG0000001108346
Q9Y345 / SLC6A5 / solute carrier family 6 member 5ENSG0000016597044
P23975 / SLC6A2 / solute carrier family 6 member 2ENSG0000010354643
Q01959 / SLC6A3 / solute carrier family 6 member 3ENSG0000014231942
P48067 / SLC6A9 / solute carrier family 6 member 9ENSG0000019651742
P31645 / SLC6A4 / solute carrier family 6 member 4ENSG0000010857642
Q9UN76 / SLC6A14 / solute carrier family 6 member 14ENSG0000026810440


Protein motifs (from Interpro)
Interpro ID Name
 IPR000175  Sodium:neurotransmitter symporter
 IPR002981  Sodium:neurotransmitter symporter, GABA, GAT-2
 IPR037272  Sodium:neurotransmitter symporter superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006836 neurotransmitter transport IEA
 biological_processGO:0015812 gamma-aminobutyric acid transport IEA
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005215 transporter activity IBA
 molecular_functionGO:0005328 neurotransmitter:sodium symporter activity IEA
 molecular_functionGO:0005332 gamma-aminobutyric acid:sodium symporter activity TAS
 molecular_functionGO:0015293 symporter activity IEA


Pathways (from Reactome)
Pathway description
Na+/Cl- dependent neurotransmitter transporters
Reuptake of GABA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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