ENSG00000157103


Homo sapiens

Features
Gene ID: ENSG00000157103
  
Biological name :SLC6A1
  
Synonyms : P30531 / SLC6A1 / solute carrier family 6 member 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: p25.3
Gene start: 10992186
Gene end: 11039249
  
Corresponding Affymetrix probe sets: 205152_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000494050
Ensembl peptide - ENSP00000494134
Ensembl peptide - ENSP00000494136
Ensembl peptide - ENSP00000494191
Ensembl peptide - ENSP00000494289
Ensembl peptide - ENSP00000494346
Ensembl peptide - ENSP00000494469
Ensembl peptide - ENSP00000494608
Ensembl peptide - ENSP00000494778
Ensembl peptide - ENSP00000494893
Ensembl peptide - ENSP00000494997
Ensembl peptide - ENSP00000495375
Ensembl peptide - ENSP00000495751
Ensembl peptide - ENSP00000495900
Ensembl peptide - ENSP00000496064
Ensembl peptide - ENSP00000496171
Ensembl peptide - ENSP00000496238
Ensembl peptide - ENSP00000496302
Ensembl peptide - ENSP00000496348
Ensembl peptide - ENSP00000496390
Ensembl peptide - ENSP00000496465
Ensembl peptide - ENSP00000496619
Ensembl peptide - ENSP00000496697
Ensembl peptide - ENSP00000496768
Ensembl peptide - ENSP00000287766
Ensembl peptide - ENSP00000411689
Ensembl peptide - ENSP00000493591
Ensembl peptide - ENSP00000493666
Ensembl peptide - ENSP00000493746
Ensembl peptide - ENSP00000493779
Ensembl peptide - ENSP00000493788
Ensembl peptide - ENSP00000493813
Ensembl peptide - ENSP00000494002
NCBI entrez gene - 6529     See in Manteia.
OMIM - 137165
RefSeq - NM_001348253
RefSeq - XM_005265411
RefSeq - XM_006713306
RefSeq - XM_011534025
RefSeq - XM_011534027
RefSeq - XM_017007071
RefSeq - XM_017007072
RefSeq - NM_001348250
RefSeq - NM_001348251
RefSeq - NM_001348252
RefSeq - NM_003042
RefSeq - XM_005265410
RefSeq Peptide - NP_001335182
RefSeq Peptide - NP_003033
RefSeq Peptide - NP_001335179
RefSeq Peptide - NP_001335180
RefSeq Peptide - NP_001335181
swissprot - B7Z3C5
swissprot - A0A024R2G0
swissprot - P30531
swissprot - C9J5P8
Ensembl - ENSG00000157103
  
Related genetic diseases (OMIM): 616421 - Myoclonic-atonic epilepsy, 616421
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slc6a1aENSDARG00000045944Danio rerio
 slc6a1bENSDARG00000039647Danio rerio
 SLC6A1ENSGALG00000004921Gallus gallus
 P31648ENSMUSG00000030310Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P48066 / SLC6A11 / solute carrier family 6 member 11ENSG0000013216451
Q9NSD5 / SLC6A13 / solute carrier family 6 member 13ENSG0000001037951
P31641 / SLC6A6 / solute carrier family 6 member 6ENSG0000013138950
P48029 / SLC6A8 / solute carrier family 6 member 8ENSG0000013082150
P48065 / SLC6A12 / solute carrier family 6 member 12ENSG0000011118148
Q9Y345 / SLC6A5 / solute carrier family 6 member 5ENSG0000016597045
P23975 / SLC6A2 / solute carrier family 6 member 2ENSG0000010354644
Q01959 / SLC6A3 / solute carrier family 6 member 3ENSG0000014231943
Q99884 / SLC6A7 / solute carrier family 6 member 7ENSG0000001108342
P48067 / SLC6A9 / solute carrier family 6 member 9ENSG0000019651742
Q9UN76 / SLC6A14 / solute carrier family 6 member 14ENSG0000026810441
P31645 / SLC6A4 / solute carrier family 6 member 4ENSG0000010857640


Protein motifs (from Interpro)
Interpro ID Name
 IPR000175  Sodium:neurotransmitter symporter
 IPR002980  Sodium:neurotransmitter symporter, GABA, GAT-1
 IPR037272  Sodium:neurotransmitter symporter superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006836 neurotransmitter transport IEA
 biological_processGO:0007268 chemical synaptic transmission TAS
 biological_processGO:0007612 learning IEA
 biological_processGO:0009636 response to toxic substance IEA
 biological_processGO:0009744 response to sucrose IEA
 biological_processGO:0010033 response to organic substance IEA
 biological_processGO:0010243 response to organonitrogen compound IEA
 biological_processGO:0010288 response to lead ion IEA
 biological_processGO:0014054 positive regulation of gamma-aminobutyric acid secretion IEA
 biological_processGO:0014070 response to organic cyclic compound IEA
 biological_processGO:0014074 response to purine-containing compound IEA
 biological_processGO:0015812 gamma-aminobutyric acid transport IEA
 biological_processGO:0032229 negative regulation of synaptic transmission, GABAergic IEA
 biological_processGO:0032355 response to estradiol IEA
 biological_processGO:0042220 response to cocaine IEA
 biological_processGO:0051260 protein homooligomerization IEA
 biological_processGO:0051592 response to calcium ion IEA
 biological_processGO:0051939 gamma-aminobutyric acid import IEA
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IEA
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0043005 neuron projection IEA
 molecular_functionGO:0005328 neurotransmitter:sodium symporter activity IEA
 molecular_functionGO:0005332 gamma-aminobutyric acid:sodium symporter activity IEA
 molecular_functionGO:0015293 symporter activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Na+/Cl- dependent neurotransmitter transporters
Reuptake of GABA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000729 Pervasive developmental disorder 
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 HP:0001249 Mental retardation 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001268 Mental deterioration 
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0002121 Absence seizures "Recurrent absence seizures are `generalized seizures` (HP:0002197) that are characterized by a sudden cessation of motor activity and by a blank facial expression with flickering of the eyelids. There is no convulsive muscular activity or loss of postural control." [HPO:probinson]
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 HP:0002133 Status epilepticus 
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 HP:0002373 Febrile seizures "Febrile seizures are convulsions induced by a fever in infants or small children and are generally characterized by loss of consciousness and tonic-clonic movements. Most febrile seizures last a minute or two." [HPO:curators]
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 HP:0002376 Developmental regression 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0007207 Seizures, tonic-clonic, photosensitive 
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 HP:0010819 Atonic seizures "A type of `seizure` (HP:0001250) characterized by a suddenloss of musle tone. Usually, consciousness is retained. In an atonic seizure, the eyelids may droop, the head may nod, and the person may drop things and fall to the ground." [HPO:probinson]
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 HP:0010849 EEG: spike-wave complexes (>3.5 Hz) "The presence of complexes of spikes and waves (>3.5 Hz) in electroencephalography (EEG)." [HPO:probinson]
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 HP:0011170 Myoclonic atonic seizures "Seizures with sudden loss or diminution of muscle tone with a preceding myoclonic or tonic event lasting one to two seconds or more, involving head, trunk, jaw or limb musculature." [HPO:jalbers]
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 HP:0011203 EEG with abnormally slow frequencies "EEG with abnormally slow frequencies." [HPO:jalbers]
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 HP:0012658 Abnormal brain FDG positron emission tomography "An anomaly detectable in [18F]-fluorodeoxyglucose (FDG) positron emission tomography (PET) brain scans. Glucose uptake measured with FDG-PET is a marker of neuronal metabolic activity." [HPO:probinson]
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 HP:0025097 Eyelid myoclonus "Marked, involuntary jerking of the eyelids." []
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 HP:0100710 Impulsivity 
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 HP:0200134 Epileptic encephalopathy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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