ENSG00000142319


Homo sapiens

Features
Gene ID: ENSG00000142319
  
Biological name :SLC6A3
  
Synonyms : Q01959 / SLC6A3 / solute carrier family 6 member 3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: p15.33
Gene start: 1392790
Gene end: 1445430
  
Corresponding Affymetrix probe sets: 206836_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000270349
NCBI entrez gene - 6531     See in Manteia.
OMIM - 126455
RefSeq - NM_001044
RefSeq Peptide - NP_001035
swissprot - Q01959
Ensembl - ENSG00000142319
  
Related genetic diseases (OMIM): 188890 - {Nicotine dependence, protection against}, 188890
  613135 - Parkinsonism-dystonia, infantile, 613135
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slc6a3ENSDARG00000004219Danio rerio
 Q61327ENSMUSG00000021609Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P23975 / SLC6A2 / solute carrier family 6 member 2ENSG0000010354665
P31645 / SLC6A4 / solute carrier family 6 member 4ENSG0000010857647
Q9Y345 / SLC6A5 / solute carrier family 6 member 5ENSG0000016597041
Q99884 / SLC6A7 / solute carrier family 6 member 7ENSG0000001108341
P30531 / SLC6A1 / solute carrier family 6 member 1ENSG0000015710341
Q9UN76 / SLC6A14 / solute carrier family 6 member 14ENSG0000026810440
P48029 / SLC6A8 / solute carrier family 6 member 8ENSG0000013082140
Q9NSD5 / SLC6A13 / solute carrier family 6 member 13ENSG0000001037940
P31641 / SLC6A6 / solute carrier family 6 member 6ENSG0000013138940
P48065 / SLC6A12 / solute carrier family 6 member 12ENSG0000011118140
P48067 / SLC6A9 / solute carrier family 6 member 9ENSG0000019651739
P48066 / SLC6A11 / solute carrier family 6 member 11ENSG0000013216438


Protein motifs (from Interpro)
Interpro ID Name
 IPR000175  Sodium:neurotransmitter symporter
 IPR002436  Sodium:neurotransmitter symporter, dopamine
 IPR037272  Sodium:neurotransmitter symporter superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006836 neurotransmitter transport IEA
 biological_processGO:0007568 aging IEA
 biological_processGO:0007595 lactation IEA
 biological_processGO:0007608 sensory perception of smell IEA
 biological_processGO:0007626 locomotory behavior IEA
 biological_processGO:0010039 response to iron ion IEA
 biological_processGO:0014070 response to organic cyclic compound IEA
 biological_processGO:0015844 monoamine transport IDA
 biological_processGO:0015872 dopamine transport IDA
 biological_processGO:0021984 adenohypophysis development IEA
 biological_processGO:0035094 response to nicotine IEA
 biological_processGO:0040018 positive regulation of multicellular organism growth IEA
 biological_processGO:0042053 regulation of dopamine metabolic process IEA
 biological_processGO:0042136 neurotransmitter biosynthetic process TAS
 biological_processGO:0042220 response to cocaine IEA
 biological_processGO:0042416 dopamine biosynthetic process IEA
 biological_processGO:0042420 dopamine catabolic process IEA
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0045471 response to ethanol IEA
 biological_processGO:0051583 dopamine uptake involved in synaptic transmission IBA
 biological_processGO:0051591 response to cAMP IEA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0060134 prepulse inhibition IEA
 biological_processGO:0090494 dopamine uptake IDA
 cellular_componentGO:0005737 cytoplasm TAS
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane TAS
 cellular_componentGO:0016600 flotillin complex IDA
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0043025 neuronal cell body IDA
 cellular_componentGO:0045121 membrane raft IDA
 cellular_componentGO:0098793 presynapse IEA
 molecular_functionGO:0002020 protease binding IEA
 molecular_functionGO:0005102 signaling receptor binding IEA
 molecular_functionGO:0005328 neurotransmitter:sodium symporter activity IEA
 molecular_functionGO:0005329 dopamine transmembrane transporter activity IDA
 molecular_functionGO:0005330 dopamine:sodium symporter activity IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008144 drug binding IEA
 molecular_functionGO:0008504 monoamine transmembrane transporter activity TAS
 molecular_functionGO:0015293 symporter activity IEA
 molecular_functionGO:0035240 dopamine binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0047485 protein N-terminus binding IEA
 molecular_functionGO:0051721 protein phosphatase 2A binding IEA


Pathways (from Reactome)
Pathway description
Dopamine clearance from the synaptic cleft
Na+/Cl- dependent neurotransmitter transporters
Defective SLC6A3 causes Parkinsonism-dystonia infantile (PKDYS)
Defective SLC6A3 causes Parkinsonism-dystonia infantile (PKDYS)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001276 Hypertonia 
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 HP:0001300 Parkinsonism 
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0002019 Constipation 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002062 Abnormality of the pyramidal tracts "An abnormality of the pyramidal system of motor neurons, whose chief element, the corticospinal tract, is the only direct connection between the brain and the spinal cord. In addition to the corticospinal tract, the pyramidal system includes the corticobulbar, corticomesencephalic, and corticopontine tracts." [HPO:curators]
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 HP:0002063 Rigidity 
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 HP:0002067 Bradykinesia "Bradykinesia literally means slow movement, and is used clinically to denote a slowness in the execution of movement (in contrast to hypokinesia, which is used to refer to slowness in the initiation of movement)." [HPO:curators]
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 HP:0002072 Chorea "Chorea (Greek for dance ) refers to widespread arrhythmic involuntary movements of a forcible, jerky and restless fashion." [HPO:curators]
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 HP:0002194 Delayed gross motor development 
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 HP:0002451 Limb dystonia 
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 HP:0003593 Early onset 
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 HP:0003676 Progressive disorder 
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 HP:0007256 Mild pyramidal signs 
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 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0100660 Dyskinesis "A movement disorder which consists of effects including diminished voluntary movements and the presence of involuntary movements." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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