ENSDARG00000045944


Danio rerio

Features
Gene ID: ENSDARG00000045944
  
Biological name :slc6a1a
  
Synonyms : slc6a1a / solute carrier family 6 (neurotransmitter transporter), member 1a
  
Possible biological names infered from orthology : P30531 / P31648 / SLC6A1 / Sodium- and chloride-dependent GABA transporter 1 / solute carrier family 6 member 1
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 4834447
Gene end: 4855122
  
Corresponding Affymetrix probe sets: Dr.22709.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000119658
NCBI entrez gene - 692318     See in Manteia.
RefSeq - NM_001045287
RefSeq Peptide - NP_001038752
swissprot - F1QUY7
ZFIN ID - ZDB-GENE-060519-23
Ensembl - ENSDARG00000045944
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SLC6A1ENSGALG00000004921Gallus gallus
 P30531ENSG00000157103Homo sapiens
 P31648ENSMUSG00000030310Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
slc6a1b / solute carrier family 6 (neurotransmitter transporter), member 1b / P31648* / SLC6A1* / P30531* / solute carrier family 6 member 1* / Sodium- and chloride-dependent GABA transporter 1 *ENSDARG0000003964777
slc6a1l / solute carrier family 6 (neurotransmitter transporter, GABA), member 1, likeENSDARG0000004120562
slc6a6b / solute carrier family 6 (neurotransmitter transporter), member 6b / P31641* / SLC6A6* / solute carrier family 6 member 6*ENSDARG0000009843845
slc6a6a / solute carrier family 6 (neurotransmitter transporter), member 6a / P31641* / SLC6A6* / O35316* / solute carrier family 6 member 6* / solute carrier family 6 (neurotransmitter tra...ENSDARG0000001253445
SLC6A13 / solute carrier family 6 member 13 / Q9NSD5*ENSDARG0000006756745
slc6a8 / solute carrier family 6 (neurotransmitter transporter), member 8 / Q8VBW1* / P48029* / solute carrier family 6 member 8* / solute carrier family 6 (neurotransmitter transporter, cr...ENSDARG0000004364643
slc6a11b / solute carrier family 6 (neurotransmitter transporter), member 11b / P48066* / P31650* / SLC6A11* / solute carrier family 6 member 11* / Sodium- and chloride-dependent GABA transporter 3 *ENSDARG0000008798143
si:ch211-117c9.5ENSDARG0000007123543
slc6a11a / solute carrier family 6 (neurotransmitter transporter), member 11aENSDARG0000007400242
si:ch211-132b12.6ENSDARG0000009454640
zgc:158427ENSDARG0000006837239
si:ch211-132b12.2ENSDARG0000009494639
slc6a22.2 / solute carrier family 6 member 22, tandem duplicate 2ENSDARG0000000135439
slc6a22.1 / solute carrier family 6 member 22, tandem duplicate 1ENSDARG0000000073039
si:ch211-132b12.3ENSDARG0000006836339
slc6a5 / solute carrier family 6 (neurotransmitter transporter), member 5 / Q9Y345* / solute carrier family 6 member 5* / solute carrier family 6 (neurotransmitter transporter, glycine), member 5*ENSDARG0000006796438
si:ch211-132b12.1ENSDARG0000006148038
slc6a2 / solute carrier family 6 (neurotransmitter transporter), member 2 / P23975* / O55192* / solute carrier family 6 member 2* / solute carrier family 6 (neurotransmitter transporter, no...ENSDARG0000001614138
zgc:158225 / Q99884* / SLC6A7* / Q6PGE7* / solute carrier family 6 member 7* / Sodium-dependent proline transporter *ENSDARG0000003000637
slc6a9 / solute carrier family 6 (neurotransmitter transporter, glycine), member 9 / P48067* / P28571* / solute carrier family 6 member 9* / Sodium- and chloride-dependent glycine transporter 1 *ENSDARG0000001853436


Protein motifs (from Interpro)
Interpro ID Name
 IPR000175  Sodium:neurotransmitter symporter
 IPR002980  Sodium:neurotransmitter symporter, GABA, GAT-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006836 neurotransmitter transport IEA
 biological_processGO:0007268 chemical synaptic transmission IBA
 biological_processGO:0015812 gamma-aminobutyric acid transport IBA
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0005887 integral component of plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0043005 neuron projection IBA
 molecular_functionGO:0005328 neurotransmitter:sodium symporter activity IEA
 molecular_functionGO:0005332 gamma-aminobutyric acid:sodium symporter activity IBA
 molecular_functionGO:0015293 symporter activity IEA


Pathways (from Reactome)
Pathway description
Na+/Cl- dependent neurotransmitter transporters
Reuptake of GABA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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