ENSDARG00000041797


Danio rerio

Features
Gene ID: ENSDARG00000041797
  
Biological name :cx28.9
  
Synonyms : connexin 28.9 / cx28.9
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 40744754
Gene end: 40750953
  
Corresponding Affymetrix probe sets: Dr.7140.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000061255
NCBI entrez gene - 492358     See in Manteia.
RefSeq - NM_001007324
RefSeq Peptide - NP_001007325
swissprot - Q5TYN9
ZFIN ID - ZDB-GENE-041114-200
Ensembl - ENSDARG00000041797
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cx32.3 / connexin 32.3ENSDARG0000004178764
cx34.5 / connexin 34.5ENSDARG0000006941160
cx28.1 / connexin 28.1ENSDARG0000004179259
cx32.2 / Q7T047 / connexin 32.2ENSDARG0000007678959
cx39.9 / connexin 39.9ENSDARG0000000408257
gja3 / gap junction protein, alpha 3 / Q64448* / Q9Y6H8*ENSDARG0000002188955
cx43 / O57474 / connexin 43ENSDARG0000004179952
gja8b / gap junction protein alpha 8 paralog b / GJA8* / P28236* / P48165* / gap junction protein alpha 8*ENSDARG0000001507651
gja8a / gap junction protein alpha 8 paralog a / GJA8* / P28236* / P48165* / gap junction protein alpha 8*ENSDARG0000006945151
gja5a / gap junction protein, alpha 5a / GJA5* / P36382* / Q01231* / gap junction protein alpha 5*ENSDARG0000004006547
gja5b / gap junction protein, alpha 5b / GJA5* / P36382* / Q01231* / gap junction protein alpha 5*ENSDARG0000006945047
cx40.8 / connexin 40.8 / GJA1* / P23242* / P17302* / gap junction protein alpha 1*ENSDARG0000007119247
cx52.7 / connexin 52.7 / GJA10* / Q9WUS4* / Q969M2* / gap junction protein alpha 10*ENSDARG0000005779246
cx39.4 / connexin 39.4 / GJA4* / P35212* / P28235* / gap junction protein alpha 4*ENSDARG0000007035745
cx52.6 / connexin 52.6 / GJA10* / Q9WUS4* / Q969M2* / gap junction protein alpha 10*ENSDARG0000003493045
cx52.9 / connexin 52.9 / GJA9* / P57773* / gap junction protein alpha 9*ENSDARG0000008645342
cx47.1 / connexin 47.1 / GJC2* / Q8BQU6* / Q5T442* / gap junction protein gamma 2*ENSDARG0000007389641
cx43.4 / connexin 43.4ENSDARG0000000709940
cx44.2 / connexin 44.2 / si:dkey-91f15.8ENSDARG0000003420740
si:dkey-91f15.1ENSDARG0000009499039


Protein motifs (from Interpro)
Interpro ID Name
 IPR000500  Connexin
 IPR013092  Connexin, N-terminal
 IPR017990  Connexin, conserved site
 IPR019570  Gap junction protein, cysteine-rich domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007154 cell communication IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005921 gap junction IEA
 cellular_componentGO:0005922 connexin complex IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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