ENSDARG00000052138


Danio rerio

Features
Gene ID: ENSDARG00000052138
  
Biological name :slc1a2a
  
Synonyms : slc1a2a / solute carrier family 1 (glial high affinity glutamate transporter), member 2a
  
Possible biological names infered from orthology : P43004 / P43006 / SLC1A2 / solute carrier family 1 (glial high affinity glutamate transporter), member 2 / solute carrier family 1 member 2
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 49862837
Gene end: 49881742
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000136807
Ensembl peptide - ENSDARP00000143212
Ensembl peptide - ENSDARP00000143007
NCBI entrez gene - 560802     See in Manteia.
RefSeq - NM_001190305
RefSeq - XM_005166477
RefSeq Peptide - NP_001177234
swissprot - A0A0R4IM70
swissprot - D7RVR8
swissprot - A0A1L1QZT2
ZFIN ID - ZDB-GENE-100422-11
Ensembl - ENSDARG00000052138
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SLC1A2ENSGALG00000037556Gallus gallus
 P43004ENSG00000110436Homo sapiens
 P43006ENSMUSG00000005089Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
slc1a2b / solute carrier family 1 (glial high affinity glutamate transporter), member 2b / P43006* / SLC1A2* / P43004* / solute carrier family 1 member 2* / solute carrier family 1 (glial h...ENSDARG0000010245381
slc1a1 / solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 / P43005* / P51906* / solute carrier family 1 member 1*ENSDARG0000002021247
slc1a3b / solute carrier family 1 (glial high affinity glutamate transporter), member 3b / P56564* / SLC1A3* / P43003* / solute carrier family 1 member 3* / solute carrier family 1 (glial h...ENSDARG0000004314847
slc1a3a / solute carrier family 1 (glial high affinity glutamate transporter), member 3a / P43003* / SLC1A3* / solute carrier family 1 member 3*ENSDARG0000010443145
slc1a6 / solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6 / O35544* / P48664* / solute carrier family 1 member 6*ENSDARG0000001009645
slc1a7b / solute carrier family 1 (glutamate transporter), member 7b / SLC1A7* / O00341* / solute carrier family 1 member 7* / solute carrier family 1 (glutamate transporter), member 7*ENSDARG0000002624842
slc1a8b / solute carrier family 1 (glutamate transporter), member 8bENSDARG0000003246542
slc1a7a / solute carrier family 1 (glutamate transporter), member 7a / SLC1A7* / O00341* / solute carrier family 1 member 7* / solute carrier family 1 (glutamate transporter), member 7*ENSDARG0000003494042
slc1a8a / solute carrier family 1 (glutamate transporter), member 8aENSDARG0000010420441
slc1a4 / solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 / O35874* / P43007* / solute carrier family 1 member 4*ENSDARG0000000055137
slc1a5 / solute carrier family 1 (neutral amino acid transporter), member 5 / Q15758* / solute carrier family 1 member 5*ENSDARG0000009918637


Protein motifs (from Interpro)
Interpro ID Name
 IPR001991  Sodium:dicarboxylate symporter
 IPR018107  Sodium:dicarboxylate symporter, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0015293 symporter activity IEA


Pathways (from Reactome)
Pathway description
Astrocytic Glutamate-Glutamine Uptake And Metabolism
Glutamate Neurotransmitter Release Cycle
Transport of inorganic cations/anions and amino acids/oligopeptides


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000152 retina retina decreased functionality , abnormal
Show

 ZFA:0001330 retinal outer plexiform layer retinal outer plexiform layer decreased amount , abnormal
Show

 ZFA:0009319 ON-bipolar cell ON-bipolar cell functionality , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr