ENSG00000110436


Homo sapiens

Features
Gene ID: ENSG00000110436
  
Biological name :SLC1A2
  
Synonyms : P43004 / SLC1A2 / solute carrier family 1 member 2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: -1
Band: p13
Gene start: 35251205
Gene end: 35420063
  
Corresponding Affymetrix probe sets: 1558009_at (Human Genome U133 Plus 2.0 Array)   1558010_s_at (Human Genome U133 Plus 2.0 Array)   208389_s_at (Human Genome U133 Plus 2.0 Array)   217055_x_at (Human Genome U133 Plus 2.0 Array)   225491_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000493762
Ensembl peptide - ENSP00000494076
Ensembl peptide - ENSP00000494113
Ensembl peptide - ENSP00000494258
Ensembl peptide - ENSP00000494669
Ensembl peptide - ENSP00000494828
Ensembl peptide - ENSP00000495126
Ensembl peptide - ENSP00000495164
Ensembl peptide - ENSP00000495188
Ensembl peptide - ENSP00000495246
Ensembl peptide - ENSP00000495277
Ensembl peptide - ENSP00000495538
Ensembl peptide - ENSP00000495799
Ensembl peptide - ENSP00000495861
Ensembl peptide - ENSP00000496093
Ensembl peptide - ENSP00000496123
Ensembl peptide - ENSP00000496375
Ensembl peptide - ENSP00000496587
Ensembl peptide - ENSP00000496667
Ensembl peptide - ENSP00000496759
Ensembl peptide - ENSP00000496760
Ensembl peptide - ENSP00000278379
Ensembl peptide - ENSP00000379099
Ensembl peptide - ENSP00000379102
Ensembl peptide - ENSP00000406133
Ensembl peptide - ENSP00000435406
Ensembl peptide - ENSP00000436029
Ensembl peptide - ENSP00000476124
Ensembl peptide - ENSP00000493765
Ensembl peptide - ENSP00000493843
Ensembl peptide - ENSP00000493924
Ensembl peptide - ENSP00000493945
Ensembl peptide - ENSP00000494025
NCBI entrez gene - 6506     See in Manteia.
OMIM - 600300
RefSeq - XM_017018137
RefSeq - XM_017018138
RefSeq - XM_017018139
RefSeq - NM_001195728
RefSeq - NM_001252652
RefSeq - NM_004171
RefSeq - XM_005253067
RefSeq - XM_011520285
RefSeq - XM_017018136
RefSeq Peptide - NP_004162
RefSeq Peptide - NP_001182657
RefSeq Peptide - NP_001239581
swissprot - H0YEK4
swissprot - P43004
swissprot - A2A2U1
swissprot - A0A163QEF0
swissprot - C9J9N5
swissprot - H0YEB1
Ensembl - ENSG00000110436
  
Related genetic diseases (OMIM): 617105 - Epileptic encephalopathy, early infantile, 41, 617105
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slc1a2aENSDARG00000052138Danio rerio
 slc1a2bENSDARG00000102453Danio rerio
 SLC1A2ENSGALG00000037556Gallus gallus
 P43006ENSMUSG00000005089Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P43005 / SLC1A1 / solute carrier family 1 member 1ENSG0000010668846
P43003 / SLC1A3 / solute carrier family 1 member 3ENSG0000007921546
O00341 / SLC1A7 / solute carrier family 1 member 7ENSG0000016238343
P48664 / SLC1A6 / solute carrier family 1 member 6ENSG0000010514343
P43007 / SLC1A4 / solute carrier family 1 member 4ENSG0000011590238
Q15758 / SLC1A5 / solute carrier family 1 member 5ENSG0000010528136


Protein motifs (from Interpro)
Interpro ID Name
 IPR001991  Sodium:dicarboxylate symporter
 IPR018107  Sodium:dicarboxylate symporter, conserved site
 IPR036458  Sodium:dicarboxylate symporter superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport TAS
 biological_processGO:0006865 amino acid transport IEA
 biological_processGO:0007268 chemical synaptic transmission TAS
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0007632 visual behavior IEA
 biological_processGO:0009416 response to light stimulus IEA
 biological_processGO:0009611 response to wounding IEA
 biological_processGO:0010259 multicellular organism aging IEA
 biological_processGO:0014047 glutamate secretion TAS
 biological_processGO:0015813 L-glutamate transmembrane transport IDA
 biological_processGO:0021537 telencephalon development IEA
 biological_processGO:0030534 adult behavior IEA
 biological_processGO:0031668 cellular response to extracellular stimulus IEA
 biological_processGO:0035264 multicellular organism growth IEA
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0043200 response to amino acid IEA
 biological_processGO:0046326 positive regulation of glucose import IEA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0070207 protein homotrimerization IDA
 biological_processGO:0070779 D-aspartate import across plasma membrane IDA
 biological_processGO:0098656 anion transmembrane transport IEA
 biological_processGO:0098712 L-glutamate import across plasma membrane IDA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane IMP
 cellular_componentGO:0009986 cell surface IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0030673 axolemma IEA
 molecular_functionGO:0005313 L-glutamate transmembrane transporter activity IDA
 molecular_functionGO:0005314 high-affinity glutamate transmembrane transporter activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008509 anion transmembrane transporter activity IEA
 molecular_functionGO:0015171 amino acid transmembrane transporter activity TAS
 molecular_functionGO:0015293 symporter activity IEA
 molecular_functionGO:0015501 glutamate:sodium symporter activity IDA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Astrocytic Glutamate-Glutamine Uptake And Metabolism
Glutamate Neurotransmitter Release Cycle
Transport of inorganic cations/anions and amino acids/oligopeptides


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001371 Contractures 
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 HP:0002059 Cerebral atrophy 
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002187 Mental retardation, profound "Severe mental retardation is defined as an intelligence quotient (IQ) below 20." [HPO:curators]
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 HP:0002376 Developmental regression 
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 HP:0002521 Hypsarrhythmia "Hypsarrhythmia is abnormal interictal high amplitude waves and a background of irregular spikes demonstrated by electroencephalography (EEG)." [HPO:curators]
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 HP:0002751 Kyphoscoliosis 
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 HP:0003623 Onset in neonatal period 
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 HP:0200134 Epileptic encephalopathy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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