ENSG00000079215


Homo sapiens

Features
Gene ID: ENSG00000079215
  
Biological name :SLC1A3
  
Synonyms : P43003 / SLC1A3 / solute carrier family 1 member 3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: p13.2
Gene start: 36606355
Gene end: 36688334
  
Corresponding Affymetrix probe sets: 1569054_at (Human Genome U133 Plus 2.0 Array)   202800_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000265113
Ensembl peptide - ENSP00000371343
Ensembl peptide - ENSP00000483657
Ensembl peptide - ENSP00000477672
Ensembl peptide - ENSP00000427203
Ensembl peptide - ENSP00000424986
Ensembl peptide - ENSP00000420992
NCBI entrez gene - 6507     See in Manteia.
OMIM - 600111
RefSeq - XM_011514084
RefSeq - NM_001166695
RefSeq - NM_001289939
RefSeq - NM_001289940
RefSeq - NM_004172
RefSeq - XM_005248342
RefSeq Peptide - NP_004163
RefSeq Peptide - NP_001160167
RefSeq Peptide - NP_001276868
RefSeq Peptide - NP_001276869
swissprot - A0A024R050
swissprot - E7EUS7
swissprot - A0A087X0U3
swissprot - P43003
swissprot - E7EUV6
swissprot - A0A087WT87
Ensembl - ENSG00000079215
  
Related genetic diseases (OMIM): 612656 - Episodic ataxia, type 6, 612656
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slc1a3aENSDARG00000104431Danio rerio
 slc1a3bENSDARG00000043148Danio rerio
 SLC1A3ENSGALG00000003582Gallus gallus
 P56564ENSMUSG00000005360Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P48664 / SLC1A6 / solute carrier family 1 member 6ENSG0000010514368
O00341 / SLC1A7 / solute carrier family 1 member 7ENSG0000016238351
P43005 / SLC1A1 / solute carrier family 1 member 1ENSG0000010668851
P43004 / SLC1A2 / solute carrier family 1 member 2ENSG0000011043649
P43007 / SLC1A4 / solute carrier family 1 member 4ENSG0000011590244
Q15758 / SLC1A5 / solute carrier family 1 member 5ENSG0000010528141


Protein motifs (from Interpro)
Interpro ID Name
 IPR001991  Sodium:dicarboxylate symporter
 IPR018107  Sodium:dicarboxylate symporter, conserved site
 IPR036458  Sodium:dicarboxylate symporter superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001504 neurotransmitter uptake TAS
 biological_processGO:0006536 glutamate metabolic process IEA
 biological_processGO:0006537 glutamate biosynthetic process IEA
 biological_processGO:0006811 ion transport TAS
 biological_processGO:0006865 amino acid transport IEA
 biological_processGO:0007268 chemical synaptic transmission TAS
 biological_processGO:0007605 sensory perception of sound IEA
 biological_processGO:0009416 response to light stimulus IEA
 biological_processGO:0009449 gamma-aminobutyric acid biosynthetic process IEA
 biological_processGO:0009611 response to wounding IEA
 biological_processGO:0014047 glutamate secretion TAS
 biological_processGO:0015813 L-glutamate transmembrane transport IDA
 biological_processGO:0021545 cranial nerve development IEA
 biological_processGO:0031223 auditory behavior IEA
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0046677 response to antibiotic IEA
 biological_processGO:0048667 cell morphogenesis involved in neuron differentiation IEA
 biological_processGO:0050806 positive regulation of synaptic transmission IEA
 biological_processGO:0050885 neuromuscular process controlling balance IEA
 biological_processGO:0051938 L-glutamate import IDA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0070779 D-aspartate import across plasma membrane IMP
 biological_processGO:0071805 potassium ion transmembrane transport IDA
 biological_processGO:0098712 L-glutamate import across plasma membrane IMP
 biological_processGO:0140009 L-aspartate import across plasma membrane IMP
 biological_processGO:1902476 chloride transmembrane transport IDA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane IMP
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0043025 neuronal cell body IEA
 cellular_componentGO:0071944 cell periphery IEA
 molecular_functionGO:0005313 L-glutamate transmembrane transporter activity IDA
 molecular_functionGO:0005314 high-affinity glutamate transmembrane transporter activity IMP
 molecular_functionGO:0015171 amino acid transmembrane transporter activity TAS
 molecular_functionGO:0015172 acidic amino acid transmembrane transporter activity IEA
 molecular_functionGO:0015293 symporter activity IEA
 molecular_functionGO:0015501 glutamate:sodium symporter activity IMP
 molecular_functionGO:0016595 glutamate binding IEA
 molecular_functionGO:0016597 amino acid binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Astrocytic Glutamate-Glutamine Uptake And Metabolism
Glutamate Neurotransmitter Release Cycle
Transport of inorganic cations/anions and amino acids/oligopeptides
Defective SLC1A3 causes episodic ataxia 6 (EA6)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000571 Hypometric saccades 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000640 Gaze-evoked nystagmus "Nystagmus made apparent by looking to the right or to the left." [HPO:curators]
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 HP:0000651 Diplopia "Diplopia is a condition in which a single object is perceived as two images, it is also known as double vision." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001269 Hemiparesis "Relatively mild weakness in the arm, leg, and in some cases the face on one side of the body." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001272 Cerebellar atrophy 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001350 Slurred speech 
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 HP:0002013 Vomiting 
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 HP:0002017 Nausea and vomiting 
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 HP:0002018 Nausea 
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 HP:0002076 Migraine 
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 HP:0002078 Truncal ataxia 
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 HP:0002131 Ataxia, episodic 
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 HP:0002183 Phonophobia 
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 HP:0002301 Hemiplegia "Paralysis (complete loss of muscle function) in the arm, leg, and in some cases the face on one side of the body." [HPO:curators]
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 HP:0002321 Vertigo "An abnormal sensation of spinning while the body is actually stationary." [HPO:curators]
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 HP:0007663 Decreased central vision 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr