ENSG00000115902


Homo sapiens

Features
Gene ID: ENSG00000115902
  
Biological name :SLC1A4
  
Synonyms : P43007 / SLC1A4 / solute carrier family 1 member 4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: p14
Gene start: 64988477
Gene end: 65023865
  
Corresponding Affymetrix probe sets: 209610_s_at (Human Genome U133 Plus 2.0 Array)   209611_s_at (Human Genome U133 Plus 2.0 Array)   212810_s_at (Human Genome U133 Plus 2.0 Array)   212811_x_at (Human Genome U133 Plus 2.0 Array)   244377_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000234256
Ensembl peptide - ENSP00000431942
NCBI entrez gene - 6509     See in Manteia.
OMIM - 600229
RefSeq - XM_006712079
RefSeq - NM_001193493
RefSeq - NM_003038
RefSeq Peptide - NP_003029
RefSeq Peptide - NP_001180422
swissprot - P43007
Ensembl - ENSG00000115902
  
Related genetic diseases (OMIM): 616657 - Spastic tetraplegia, thin corpus callosum, and progressive microcephaly, 616657
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slc1a4ENSDARG00000000551Danio rerio
 SLC1A4ENSGALG00000008811Gallus gallus
 O35874ENSMUSG00000020142Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q15758 / SLC1A5 / solute carrier family 1 member 5ENSG0000010528160
P43003 / SLC1A3 / solute carrier family 1 member 3ENSG0000007921544
P48664 / SLC1A6 / solute carrier family 1 member 6ENSG0000010514343
P43004 / SLC1A2 / solute carrier family 1 member 2ENSG0000011043641
P43005 / SLC1A1 / solute carrier family 1 member 1ENSG0000010668840
O00341 / SLC1A7 / solute carrier family 1 member 7ENSG0000016238340


Protein motifs (from Interpro)
Interpro ID Name
 IPR001991  Sodium:dicarboxylate symporter
 IPR018107  Sodium:dicarboxylate symporter, conserved site
 IPR036458  Sodium:dicarboxylate symporter superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003333 amino acid transmembrane transport IEA
 biological_processGO:0006865 amino acid transport TAS
 biological_processGO:0006868 glutamine transport TAS
 biological_processGO:0015808 L-alanine transport IDA
 biological_processGO:0015811 L-cystine transport IDA
 biological_processGO:0015824 proline transport IDA
 biological_processGO:0015825 L-serine transport IDA
 biological_processGO:0015826 threonine transport IDA
 biological_processGO:0034589 hydroxyproline transport IDA
 biological_processGO:0035249 synaptic transmission, glutamatergic NAS
 biological_processGO:0035524 proline transmembrane transport IEA
 biological_processGO:0050890 cognition IMP
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:1902476 chloride transmembrane transport IEA
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0005815 microtubule organizing center IDA
 cellular_componentGO:0005882 intermediate filament IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane IC
 cellular_componentGO:0009986 cell surface HDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane NAS
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0042470 melanosome IEA
 cellular_componentGO:0043025 neuronal cell body IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005254 chloride channel activity IDA
 molecular_functionGO:0015171 amino acid transmembrane transporter activity TAS
 molecular_functionGO:0015175 neutral amino acid transmembrane transporter activity IEA
 molecular_functionGO:0015180 L-alanine transmembrane transporter activity IDA
 molecular_functionGO:0015184 L-cystine transmembrane transporter activity IDA
 molecular_functionGO:0015186 L-glutamine transmembrane transporter activity TAS
 molecular_functionGO:0015193 L-proline transmembrane transporter activity IDA
 molecular_functionGO:0015194 L-serine transmembrane transporter activity IDA
 molecular_functionGO:0015195 L-threonine transmembrane transporter activity IDA
 molecular_functionGO:0015293 symporter activity IEA
 molecular_functionGO:0034590 L-hydroxyproline transmembrane transporter activity IDA


Pathways (from Reactome)
Pathway description
Amino acid transport across the plasma membrane


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000253 Microcephaly, progressive "Progressive microcephaly is diagnosed when the head circumference falls progressively behind age- and gender-dependent norms." [HPO:curators]
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 HP:0000737 Irritability 
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 HP:0000752 Hyperactivity 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0002059 Cerebral atrophy 
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002510 Spastic tetraplegia "Spastic paralysis affecting all four limbs." [HPO:curators]
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 HP:0002540 Inability to walk 
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003577 Onset at birth 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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