ENSDARG00000102453


Danio rerio

Features
Gene ID: ENSDARG00000102453
  
Biological name :slc1a2b
  
Synonyms : slc1a2b / solute carrier family 1 (glial high affinity glutamate transporter), member 2b
  
Possible biological names infered from orthology : P43004 / P43006 / SLC1A2 / solute carrier family 1 (glial high affinity glutamate transporter), member 2 / solute carrier family 1 member 2
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 37366698
Gene end: 37407757
  
Corresponding Affymetrix probe sets: Dr.7211.1.A1_at (Zebrafish Array)   NM_199979_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000134622
Ensembl peptide - ENSDARP00000151227
Ensembl peptide - ENSDARP00000149893
Ensembl peptide - ENSDARP00000133248
NCBI entrez gene - 335836     See in Manteia.
RefSeq - NM_199979
RefSeq Peptide - NP_956273
swissprot - D7RVR7
swissprot - A0A0R4IGM0
swissprot - Q6PH15
ZFIN ID - ZDB-GENE-030131-7779
Ensembl - ENSDARG00000102453
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SLC1A2ENSGALG00000037556Gallus gallus
 P43004ENSG00000110436Homo sapiens
 P43006ENSMUSG00000005089Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
slc1a2a / solute carrier family 1 (glial high affinity glutamate transporter), member 2a / P43006* / SLC1A2* / P43004* / solute carrier family 1 member 2* / solute carrier family 1 (glial h...ENSDARG0000005213879
slc1a3a / solute carrier family 1 (glial high affinity glutamate transporter), member 3a / P43003* / SLC1A3* / solute carrier family 1 member 3*ENSDARG0000010443145
slc1a3b / solute carrier family 1 (glial high affinity glutamate transporter), member 3b / P56564* / SLC1A3* / P43003* / solute carrier family 1 member 3* / solute carrier family 1 (glial h...ENSDARG0000004314845
slc1a1 / solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 / P43005* / P51906* / solute carrier family 1 member 1*ENSDARG0000002021245
slc1a6 / solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6 / O35544* / P48664* / solute carrier family 1 member 6*ENSDARG0000001009644
slc1a7a / solute carrier family 1 (glutamate transporter), member 7a / SLC1A7* / O00341* / solute carrier family 1 member 7* / solute carrier family 1 (glutamate transporter), member 7*ENSDARG0000003494041
slc1a7b / solute carrier family 1 (glutamate transporter), member 7b / SLC1A7* / O00341* / solute carrier family 1 member 7* / solute carrier family 1 (glutamate transporter), member 7*ENSDARG0000002624841
slc1a8b / solute carrier family 1 (glutamate transporter), member 8bENSDARG0000003246541
slc1a8a / solute carrier family 1 (glutamate transporter), member 8aENSDARG0000010420438
slc1a4 / solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 / O35874* / P43007* / solute carrier family 1 member 4*ENSDARG0000000055137
slc1a5 / solute carrier family 1 (neutral amino acid transporter), member 5 / Q15758* / solute carrier family 1 member 5*ENSDARG0000009918636


Protein motifs (from Interpro)
Interpro ID Name
 IPR001991  Sodium:dicarboxylate symporter
 IPR018107  Sodium:dicarboxylate symporter, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008345 larval locomotory behavior IMP
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0015293 symporter activity IEA


Pathways (from Reactome)
Pathway description
Astrocytic Glutamate-Glutamine Uptake And Metabolism
Glutamate Neurotransmitter Release Cycle
Transport of inorganic cations/anions and amino acids/oligopeptides


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000135 notochord notochord degenerate , abnormal
notochord damaged , abnormal
Show

 ZFA:0000152 retina retina decreased functionality , abnormal
retina decreased amount , abnormal
Show

 ZFA:0001094 whole organism whole organism shape , abnormal
whole organism decreased length , abnormal
whole organism lethal (sensu genetics) , abnormal
whole organism partially paralysed , abnormal
whole organism viability , abnormal
whole organism increased behavioural activity , abnormal
Show

 ZFA:0001117 post-vent region post-vent region movement quality , abnormal
Show

 ZFA:0009243 CaP motoneuron CaP motoneuron functionality , abnormal
Show

 ZFA:0009319 ON-bipolar cell ON-bipolar cell functionality , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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