ENSDARG00000053119


Danio rerio

Features
Gene ID: ENSDARG00000053119
  
Biological name :smpdl3a
  
Synonyms : smpdl3a / sphingomyelin phosphodiesterase, acid-like 3A
  
Possible biological names infered from orthology : P70158 / Q92484
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 40337423
Gene end: 40367493
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000116492
Ensembl peptide - ENSDARP00000069581
NCBI entrez gene - 541525     See in Manteia.
RefSeq - NM_001014338
RefSeq Peptide - NP_001014360
swissprot - F1R1T9
swissprot - F1Q7D3
ZFIN ID - ZDB-GENE-050327-61
Ensembl - ENSDARG00000053119
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000030275Gallus gallus
 Q92484ENSG00000172594Homo sapiens
 P70158ENSMUSG00000019872Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
smpdl3b / sphingomyelin phosphodiesterase, acid-like 3B / P58242* / Q92485*ENSDARG0000001013033
smpd1 / sphingomyelin phosphodiesterase 1, acid lysosomal / P17405* / Q04519* / sphingomyelin phosphodiesterase 1*ENSDARG0000007612125


Protein motifs (from Interpro)
Interpro ID Name
 IPR004843  Calcineurin-like phosphoesterase domain, ApaH type
 IPR017064  Acid sphingomyelinase-like phosphodiesterase, predicted
 IPR029052  Metallo-dependent phosphatase-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006685 sphingomyelin catabolic process IEA
 cellular_componentGO:0005615 extracellular space IEA
 molecular_functionGO:0004767 sphingomyelin phosphodiesterase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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