ENSDARG00000053713


Danio rerio

Features
Gene ID: ENSDARG00000053713
  
Biological name :ccdc88c
  
Synonyms : ccdc88c / coiled-coil domain containing 88C
  
Possible biological names infered from orthology : Protein Daple / Q6VGS5 / Q9P219
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 38602602
Gene end: 38716245
  
Corresponding Affymetrix probe sets: Dr.11563.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000062009
Ensembl peptide - ENSDARP00000149375
NCBI entrez gene - 553231     See in Manteia.
RefSeq - XM_009293222
RefSeq - XM_001921892
swissprot - F1QG38
ZFIN ID - ZDB-GENE-100419-3
Ensembl - ENSDARG00000053713
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CCDC88CENSGALG00000040156Gallus gallus
 Q9P219ENSG00000015133Homo sapiens
 Q6VGS5ENSMUSG00000021182Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ccdc88aa / coiled-coil domain containing 88Aa / Q5SNZ0* / Q3V6T2* / Girdin * / CCDC88A* / coiled-coil domain containing 88A*ENSDARG0000007844027
ccdc88b / coiled-coil domain containing 88B / A6NC98* / Q4QRL3* / Coiled-coil domain-containing protein 88B *ENSDARG0000007618924
hook1 / Q5TZ80 / hook microtubule-tethering protein 1 / 1 * / Q8BIL5* / Q9UJC3*ENSDARG000000429469
HOOK3 / hook microtubule tethering protein 3 / Q86VS8*ENSDARG000001143296
hook2 / hook microtubule-tethering protein 2 / 2 * / Q7TMK6* / Q96ED9*ENSDARG000000992355
hook2 / hook microtubule-tethering protein 2 / 2 * / Q7TMK6* / Q96ED9*ENSDARG000000393092


Protein motifs (from Interpro)
Interpro ID Name
 IPR008636  Hook-like protein family
 IPR027719  Protein Daple


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016055 Wnt signaling pathway IEA
 biological_processGO:0030705 cytoskeleton-dependent intracellular transport IBA
 biological_processGO:0031122 cytoplasmic microtubule organization IBA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005813 centrosome IBA
 molecular_functionGO:0008017 microtubule binding IBA
 molecular_functionGO:0051959 dynein light intermediate chain binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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