ENSG00000015133


Homo sapiens

Features
Gene ID: ENSG00000015133
  
Biological name :CCDC88C
  
Synonyms : CCDC88C / coiled-coil domain containing 88C / Q9P219
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: -1
Band: q32.12
Gene start: 91271323
Gene end: 91417844
  
Corresponding Affymetrix probe sets: 215343_at (Human Genome U133 Plus 2.0 Array)   227228_s_at (Human Genome U133 Plus 2.0 Array)   231288_at (Human Genome U133 Plus 2.0 Array)   243869_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000330332
Ensembl peptide - ENSP00000374507
Ensembl peptide - ENSP00000451392
Ensembl peptide - ENSP00000452406
Ensembl peptide - ENSP00000374506
NCBI entrez gene - 440193     See in Manteia.
OMIM - 611204
RefSeq - XM_017021335
RefSeq - NM_001080414
RefSeq - XM_005267691
RefSeq - XM_011536796
RefSeq Peptide - NP_001073883
swissprot - Q0P665
swissprot - Q9P219
swissprot - G3V3S0
swissprot - H0YJX5
swissprot - A0A0A0MR69
Ensembl - ENSG00000015133
  
Related genetic diseases (OMIM): 236600 - Hydrocephalus, nonsyndromic, autosomal recessive, 236600
  616053 - ?Spinocerebellar ataxia 40, 616053
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ccdc88cENSDARG00000053713Danio rerio
 CCDC88CENSGALG00000040156Gallus gallus
 Q6VGS5ENSMUSG00000021182Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q3V6T2 / CCDC88A / coiled-coil domain containing 88AENSG0000011535545
A6NC98 / CCDC88B / coiled-coil domain containing 88BENSG0000016807123
HOOK3 / Q86VS8 / hook microtubule tethering protein 3ENSG000001681729
HOOK2 / Q96ED9 / hook microtubule tethering protein 2ENSG000000950669
HOOK1 / Q9UJC3 / hook microtubule tethering protein 1ENSG000001347098


Protein motifs (from Interpro)
Interpro ID Name
 IPR008636  Hook-like protein family
 IPR027719  Protein Daple


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001932 regulation of protein phosphorylation IEA
 biological_processGO:0016055 Wnt signaling pathway IEA
 biological_processGO:0030705 cytoskeleton-dependent intracellular transport IBA
 biological_processGO:0031098 stress-activated protein kinase signaling cascade IMP
 biological_processGO:0031122 cytoplasmic microtubule organization IBA
 biological_processGO:0031648 protein destabilization IEA
 biological_processGO:0051260 protein homooligomerization IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005813 centrosome IBA
 molecular_functionGO:0008017 microtubule binding IBA
 molecular_functionGO:0030165 PDZ domain binding IEA
 molecular_functionGO:0043621 protein self-association IEA
 molecular_functionGO:0051959 dynein light intermediate chain binding IBA


Pathways (from Reactome)
Pathway description
Negative regulation of TCF-dependent signaling by DVL-interacting proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000238 Hydrocephalus 
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 HP:0000511 Vertical supranuclear gaze palsy 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001310 Dysmetria 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
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 HP:0002075 Dysdiadochokinesis "An inability to perform rapidly alternating movements, such as rhythmically tapping the fingers on the knee, generally related to a cerebellar lesion." [HPO:curators]
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 HP:0002080 Intention tremor "An oscillatory cerebellar ataxia that tends to be absent when the limbs are inactive and during the first part of voluntary movement but worsening as the movement continues and greater precision is required (e.g., in touching a target such as the patient s nose or a physician s finger)." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002136 Broad-based gait "An abnormal gait pattern in which persons stand and walk with their feet spaced widely apart. This is often a component of cerebellar ataxia." [HPO:curators]
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 HP:0002168 Scanning speech 
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 HP:0002313 Spastic paraparesis 
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 HP:0002317 Unsteady gait 
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 HP:0003577 Onset at birth 
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 HP:0003581 Onset in adulthood 
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 HP:0003677 Slow progression 
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 HP:0004302 Functional motor problems. 
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 HP:0006879 Pontocerebellar atrophy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000004975 DVL2 / O14641 / dishevelled segment polarity protein 2  / reaction / complex
 ENSG00000161202 DVL3 / Q92997 / dishevelled segment polarity protein 3  / reaction / complex






 

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