ENSG00000115355


Homo sapiens

Features
Gene ID: ENSG00000115355
  
Biological name :CCDC88A
  
Synonyms : CCDC88A / coiled-coil domain containing 88A / Q3V6T2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: p16.1
Gene start: 55287842
Gene end: 55419895
  
Corresponding Affymetrix probe sets: 1562648_at (Human Genome U133 Plus 2.0 Array)   219387_at (Human Genome U133 Plus 2.0 Array)   221078_s_at (Human Genome U133 Plus 2.0 Array)   225045_at (Human Genome U133 Plus 2.0 Array)   238759_at (Human Genome U133 Plus 2.0 Array)   239233_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000493703
Ensembl peptide - ENSP00000493675
Ensembl peptide - ENSP00000493994
Ensembl peptide - ENSP00000494021
Ensembl peptide - ENSP00000494030
Ensembl peptide - ENSP00000494054
Ensembl peptide - ENSP00000494371
Ensembl peptide - ENSP00000494376
Ensembl peptide - ENSP00000494401
Ensembl peptide - ENSP00000494555
Ensembl peptide - ENSP00000494811
Ensembl peptide - ENSP00000494876
Ensembl peptide - ENSP00000494991
Ensembl peptide - ENSP00000495183
Ensembl peptide - ENSP00000495208
Ensembl peptide - ENSP00000495652
Ensembl peptide - ENSP00000495712
Ensembl peptide - ENSP00000495919
Ensembl peptide - ENSP00000495933
Ensembl peptide - ENSP00000496040
Ensembl peptide - ENSP00000496148
Ensembl peptide - ENSP00000496195
Ensembl peptide - ENSP00000496310
Ensembl peptide - ENSP00000496475
Ensembl peptide - ENSP00000496555
Ensembl peptide - ENSP00000496581
Ensembl peptide - ENSP00000496591
Ensembl peptide - ENSP00000496758
Ensembl peptide - ENSP00000263630
Ensembl peptide - ENSP00000338728
Ensembl peptide - ENSP00000390012
Ensembl peptide - ENSP00000404431
Ensembl peptide - ENSP00000405080
Ensembl peptide - ENSP00000410608
Ensembl peptide - ENSP00000413401
Ensembl peptide - ENSP00000415267
Ensembl peptide - ENSP00000480931
Ensembl peptide - ENSP00000493638
Ensembl peptide - ENSP00000493656
Ensembl peptide - ENSP00000493668
NCBI entrez gene - 55704     See in Manteia.
OMIM - 609736
RefSeq - XM_017004478
RefSeq - XM_011532968
RefSeq - XM_017004476
RefSeq - XM_017004477
RefSeq - XM_017004479
RefSeq - XM_017004480
RefSeq - XM_017004481
RefSeq - NM_001135597
RefSeq - NM_001254943
RefSeq - NM_018084
RefSeq - XM_005264418
RefSeq - XM_005264421
RefSeq - XM_005264426
RefSeq - XM_011532965
RefSeq - XM_011532966
RefSeq - XM_011532967
RefSeq Peptide - NP_001129069
RefSeq Peptide - NP_060554
RefSeq Peptide - NP_001241872
swissprot - A0A087WXD9
swissprot - H0Y470
swissprot - Q3V6T2
swissprot - H0Y7K3
swissprot - H0Y7U8
swissprot - H7C2C6
Ensembl - ENSG00000115355
  
Related genetic diseases (OMIM): 617507 - ?PEHO syndrome-like, 617507
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ccdc88aaENSDARG00000078440Danio rerio
 CCDC88AENSGALG00000043587Gallus gallus
 Q5SNZ0ENSMUSG00000032740Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9P219 / CCDC88C / coiled-coil domain containing 88CENSG0000001513348
A6NC98 / CCDC88B / coiled-coil domain containing 88BENSG0000016807123
HOOK3 / Q86VS8 / hook microtubule tethering protein 3ENSG0000016817210
HOOK1 / Q9UJC3 / hook microtubule tethering protein 1ENSG000001347099
HOOK2 / Q96ED9 / hook microtubule tethering protein 2ENSG000000950669


Protein motifs (from Interpro)
Interpro ID Name
 IPR008636  Hook-like protein family
 IPR027717  Girdin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001932 regulation of protein phosphorylation ISS
 biological_processGO:0006260 DNA replication IEA
 biological_processGO:0006275 regulation of DNA replication ISS
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0010975 regulation of neuron projection development ISS
 biological_processGO:0016477 cell migration IEA
 biological_processGO:0030030 cell projection organization IEA
 biological_processGO:0030032 lamellipodium assembly IMP
 biological_processGO:0030705 cytoskeleton-dependent intracellular transport IBA
 biological_processGO:0031122 cytoplasmic microtubule organization IBA
 biological_processGO:0031929 TOR signaling ISS
 biological_processGO:0032148 activation of protein kinase B activity ISS
 biological_processGO:0032956 regulation of actin cytoskeleton organization IEA
 biological_processGO:0042127 regulation of cell proliferation ISS
 biological_processGO:0045724 positive regulation of cilium assembly IMP
 biological_processGO:0061024 membrane organization IDA
 biological_processGO:1903566 positive regulation of protein localization to cilium IMP
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IDA
 cellular_componentGO:0005794 Golgi apparatus IDA
 cellular_componentGO:0005813 centrosome IBA
 cellular_componentGO:0005814 centriole IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030027 lamellipodium IEA
 cellular_componentGO:0031252 cell leading edge IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0036064 ciliary basal body IDA
 cellular_componentGO:0042995 cell projection IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0008017 microtubule binding IBA
 molecular_functionGO:0035091 phosphatidylinositol binding IDA
 molecular_functionGO:0042803 protein homodimerization activity IPI
 molecular_functionGO:0043422 protein kinase B binding IPI
 molecular_functionGO:0051959 dynein light intermediate chain binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000194 Open mouth 
Show

 HP:0000253 Microcephaly, progressive "Progressive microcephaly is diagnosed when the head circumference falls progressively behind age- and gender-dependent norms." [HPO:curators]
Show

 HP:0000278 Retrognathia 
Show

 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
Show

 HP:0000293 Full cheeks 
Show

 HP:0000341 Narrow forehead "An abnormally reduced side-to-side width of the forehead." [HPO:curators]
Show

 HP:0000648 Optic atrophy 
Show

 HP:0000969 Edema "An abnormal accumulation of fluid beneath the skin, or in one or more cavities of the body. Edema may be related to one or more of the following factors: 1) increased capillary hydrostatic pressure, 2) decreased osmotic pressure of plasma, 3) decreased tissue tension and lymphatic drainage, 4) increased osmotic pressure of tissue fluids, and 5) increased capillary permeability." [HPO:curators]
Show

 HP:0001155 Abnormality of the hand "An abnormality affecting one or both hands." [HPO:curators]
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001272 Cerebellar atrophy 
Show

 HP:0001302 Pachygyria "A congenital abnormality of the cerebral hemisphere chacterized by unusually thick gyrations (convolutions) of the cerebral cortex." [HPO:curators]
Show

 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
Show

 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
Show

 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
Show

 HP:0002126 Polymicrogyria "A congenital abnormality of the cerebral hemisphere characterized by an excessive number of small gyri (convolutions) on the surface of the brain." [HPO:curators]
Show

 HP:0002187 Mental retardation, profound "Severe mental retardation is defined as an intelligence quotient (IQ) below 20." [HPO:curators]
Show

 HP:0002521 Hypsarrhythmia "Hypsarrhythmia is abnormal interictal high amplitude waves and a background of irregular spikes demonstrated by electroencephalography (EEG)." [HPO:curators]
Show

 HP:0002529 Neuropathology shows neuronal loss in basal ganglia, brainstem, and cerebellum 
Show

 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
Show

 HP:0003469 Dysmyelination 
Show

 HP:0006829 Severe muscular hypotonia "A severe degree of muscular hypotonia characterized by markedly reduced muscle tone." [HPO:curators]
Show

 HP:0007105 Infantile encephalopathy 
Show

 HP:0007281 Developmental arrest 
Show

 HP:0007965 Absence of visual evoked potentials 
Show

 HP:0008872 Feeding problems in infancy 
Show

 HP:0010804 Tented upper lip vermilion "Triangular appearance of the oral aperture with the apex in the midpoint of the upper vermilion and the lower vermilion forming the base." [pmid:19125428]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr