ENSDARG00000053990


Danio rerio

Features
Gene ID: ENSDARG00000053990
  
Biological name :hmgb2b
  
Synonyms : high mobility group box 2b / hmgb2b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 45025909
Gene end: 45029559
  
Corresponding Affymetrix probe sets: Dr.9743.1.S1_at (Zebrafish Array)   Dr.9743.2.S1_a_at (Zebrafish Array)   NM_001004674_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000058363
Ensembl peptide - ENSDARP00000153222
NCBI entrez gene - 447936     See in Manteia.
RefSeq - NM_001004674
RefSeq Peptide - NP_001004674
swissprot - Q66IB6
ZFIN ID - ZDB-GENE-040912-122
Ensembl - ENSDARG00000053990
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hmgb2a / high mobility group box 2a / HMGB2* / P26583* / P30681* / high mobility group box 2* / High mobility group protein B2 *ENSDARG0000002972266
hmgb1a / high mobility group box 1a / HMGB1* / P09429* / P63158* / high mobility group box 1* / High mobility group protein B1 *ENSDARG0000009917560
hmgb1b / high mobility group box 1b / HMGB1* / P09429* / P63158* / high mobility group box 1* / High mobility group protein B1 *ENSDARG0000003047957
hmgb3a / high mobility group box 3a / HMGB3* / O15347* / O54879* / high mobility group box 3* / High mobility group protein B3 *ENSDARG0000005672552
hmgb3b / high mobility group box 3b / HMGB3* / O15347* / O54879* / high mobility group box 3* / High mobility group protein B3 *ENSDARG0000000640851


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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