ENSDARG00000029722


Danio rerio

Features
Gene ID: ENSDARG00000029722
  
Biological name :hmgb2a
  
Synonyms : high mobility group box 2a / hmgb2a
  
Possible biological names infered from orthology : high mobility group box 2 / High mobility group protein B2 / HMGB2 / P26583 / P30681
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 38169512
Gene end: 38171787
  
Corresponding Affymetrix probe sets: Dr.9746.12.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000047158
Ensembl peptide - ENSDARP00000114997
Ensembl peptide - ENSDARP00000123575
swissprot - B8JL29
swissprot - B8JL30
swissprot - B8JL31
ZFIN ID - ZDB-GENE-051120-126
Ensembl - ENSDARG00000029722
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HMGB2ENSGALG00000010745Gallus gallus
 HMGB2ENSG00000164104Homo sapiens
 Hmgb2ENSMUSG00000054717Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hmgb1a / high mobility group box 1a / HMGB1* / P09429* / P63158* / high mobility group box 1* / High mobility group protein B1 *ENSDARG0000009917568
hmgb2b / high mobility group box 2bENSDARG0000005399067
hmgb1b / high mobility group box 1b / HMGB1* / P09429* / P63158* / high mobility group box 1* / High mobility group protein B1 *ENSDARG0000003047966
hmgb3b / high mobility group box 3b / HMGB3* / O15347* / O54879* / high mobility group box 3* / High mobility group protein B3 *ENSDARG0000000640855
hmgb3a / high mobility group box 3a / HMGB3* / O15347* / O54879* / high mobility group box 3* / High mobility group protein B3 *ENSDARG0000005672555


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
Activation of DNA fragmentation factor


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000135 notochord notochord undulate , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001117 post-vent region post-vent region curved , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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