ENSDARG00000006408


Danio rerio

Features
Gene ID: ENSDARG00000006408
  
Biological name :hmgb3b
  
Synonyms : high mobility group box 3b / hmgb3b
  
Possible biological names infered from orthology : high mobility group box 3 / High mobility group protein B3 / HMGB3 / O15347 / O54879
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 34119759
Gene end: 34129776
  
Corresponding Affymetrix probe sets: Dr.7889.1.S1_at (Zebrafish Array)   NM_001017769_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000107780
Ensembl peptide - ENSDARP00000151926
Ensembl peptide - ENSDARP00000007566
NCBI entrez gene - 550466     See in Manteia.
RefSeq - NM_001017769
RefSeq Peptide - NP_001017769
swissprot - E7F0H8
swissprot - F1Q895
ZFIN ID - ZDB-GENE-050417-290
Ensembl - ENSDARG00000006408
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HMGB3ENSGALG00000009071Gallus gallus
 HMGB3ENSG00000029993Homo sapiens
 Hmgb3ENSMUSG00000015217Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hmgb3a / high mobility group box 3a / HMGB3* / O15347* / O54879* / high mobility group box 3* / High mobility group protein B3 *ENSDARG0000005672571
hmgb1a / high mobility group box 1a / HMGB1* / P09429* / P63158* / high mobility group box 1* / High mobility group protein B1 *ENSDARG0000009917564
hmgb1b / high mobility group box 1b / HMGB1* / P09429* / P63158* / high mobility group box 1* / High mobility group protein B1 *ENSDARG0000003047961
hmgb2a / high mobility group box 2a / HMGB2* / P26583* / P30681* / high mobility group box 2* / High mobility group protein B2 *ENSDARG0000002972259
hmgb2b / high mobility group box 2bENSDARG0000005399055


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain
 IPR017967  HMG box A DNA-binding domain, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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