ENSGALG00000009071


Gallus gallus

Features
Gene ID: ENSGALG00000009071
  
Biological name :HMGB3
  
Synonyms : High mobility group protein B3 / HMGB3 / P40618
  
Possible biological names infered from orthology : high mobility group box 3 / O15347 / O54879
  
Species: Gallus gallus
  
Chr. number: 4
Strand: -1
Band:
Gene start: 17714914
Gene end: 17721481
  
Corresponding Affymetrix probe sets: Gga.2296.1.S1_at (Chicken Array)   Gga.4513.1.S1_at (Chicken Array)   Gga.4513.1.S2_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000014747
Ensembl peptide - ENSGALP00000064062
Ensembl peptide - ENSGALP00000061195
Ensembl peptide - ENSGALP00000053623
NCBI entrez gene - 396232     See in Manteia.
RefSeq - NM_205295
RefSeq Peptide - NP_990626
swissprot - A0A1D5PLA8
swissprot - A0A1L1RYW7
swissprot - P40618
swissprot - A0A0A0MQ46
swissprot - A0A1L1RQX4
Ensembl - ENSGALG00000009071
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hmgb3aENSDARG00000056725Danio rerio
 hmgb3bENSDARG00000006408Danio rerio
 HMGB3ENSG00000029993Homo sapiens
 Hmgb3ENSMUSG00000015217Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HMGB1 / Q9YH06 / High mobility group protein B1 / P09429* / P63158* / high mobility group box 1*ENSGALG0000004287572
HMGB2 / high mobility group protein B2 / P26583* / P30681* / high mobility group box 2*ENSGALG0000001074571


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain
 IPR017967  HMG box A DNA-binding domain, conserved site
 IPR031077  High mobility group protein HMGB3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0032392 DNA geometric change IDA
 biological_processGO:0045087 innate immune response IEA
 biological_processGO:0045578 negative regulation of B cell differentiation IEA
 biological_processGO:0045638 negative regulation of myeloid cell differentiation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0000400 four-way junction DNA binding IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008301 DNA binding, bending IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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