ENSDARG00000056725


Danio rerio

Features
Gene ID: ENSDARG00000056725
  
Biological name :hmgb3a
  
Synonyms : high mobility group box 3a / hmgb3a
  
Possible biological names infered from orthology : high mobility group box 3 / High mobility group protein B3 / HMGB3 / O15347 / O54879
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 25913225
Gene end: 25918281
  
Corresponding Affymetrix probe sets: Dr.25683.9.S1_at (Zebrafish Array)   Dr.6932.2.A1_at (Zebrafish Array)   Dr.6932.3.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000109266
Ensembl peptide - ENSDARP00000142659
Ensembl peptide - ENSDARP00000111817
NCBI entrez gene - 561025     See in Manteia.
RefSeq - NM_001122836
RefSeq Peptide - NP_001116308
swissprot - E7EZP6
swissprot - A0A1D5NS50
swissprot - F1QGP8
ZFIN ID - ZDB-GENE-050428-1
Ensembl - ENSDARG00000056725
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HMGB3ENSGALG00000009071Gallus gallus
 HMGB3ENSG00000029993Homo sapiens
 Hmgb3ENSMUSG00000015217Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hmgb3b / high mobility group box 3b / HMGB3* / O15347* / O54879* / high mobility group box 3* / High mobility group protein B3 *ENSDARG0000000640866
hmgb1a / high mobility group box 1a / HMGB1* / P09429* / P63158* / high mobility group box 1* / High mobility group protein B1 *ENSDARG0000009917557
hmgb1b / high mobility group box 1b / HMGB1* / P09429* / P63158* / high mobility group box 1* / High mobility group protein B1 *ENSDARG0000003047957
hmgb2a / high mobility group box 2a / HMGB2* / P26583* / P30681* / high mobility group box 2* / High mobility group protein B2 *ENSDARG0000002972255
hmgb2b / high mobility group box 2bENSDARG0000005399053


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr