ENSDARG00000030479


Danio rerio

Features
Gene ID: ENSDARG00000030479
  
Biological name :hmgb1b
  
Synonyms : high mobility group box 1b / hmgb1b
  
Possible biological names infered from orthology : high mobility group box 1 / High mobility group protein B1 / HMGB1 / P09429 / P63158
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 31513065
Gene end: 31516583
  
Corresponding Affymetrix probe sets: Dr.24802.2.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000128261
Ensembl peptide - ENSDARP00000128993
Ensembl peptide - ENSDARP00000129766
Ensembl peptide - ENSDARP00000129778
NCBI entrez gene - 795095     See in Manteia.
RefSeq - NM_001099251
RefSeq Peptide - NP_001092721
swissprot - X1WDG2
swissprot - X1WFI9
swissprot - X1WHQ3
ZFIN ID - ZDB-GENE-030131-8480
Ensembl - ENSDARG00000030479
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HMGB1ENSGALG00000042875Gallus gallus
 HMGB1ENSG00000189403Homo sapiens
 Hmgb1ENSMUSG00000066551Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hmgb1a / high mobility group box 1a / HMGB1* / P09429* / P63158* / high mobility group box 1* / High mobility group protein B1 *ENSDARG0000009917580
hmgb2a / high mobility group box 2a / HMGB2* / P26583* / P30681* / high mobility group box 2* / High mobility group protein B2 *ENSDARG0000002972271
hmgb3a / high mobility group box 3a / HMGB3* / O15347* / O54879* / high mobility group box 3* / High mobility group protein B3 *ENSDARG0000005672562
hmgb3b / high mobility group box 3b / HMGB3* / O15347* / O54879* / high mobility group box 3* / High mobility group protein B3 *ENSDARG0000000640861
hmgb2b / high mobility group box 2bENSDARG0000005399061


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain
 IPR017967  HMG box A DNA-binding domain, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
Activation of DNA fragmentation factor
Regulation of TLR by endogenous ligand
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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