ENSG00000029993


Homo sapiens

Features
Gene ID: ENSG00000029993
  
Biological name :HMGB3
  
Synonyms : high mobility group box 3 / HMGB3 / O15347
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: 1
Band: q28
Gene start: 150980509
Gene end: 150990775
  
Corresponding Affymetrix probe sets: 203744_at (Human Genome U133 Plus 2.0 Array)   225601_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000405601
Ensembl peptide - ENSP00000442758
Ensembl peptide - ENSP00000417027
Ensembl peptide - ENSP00000410354
Ensembl peptide - ENSP00000359393
NCBI entrez gene - 3149     See in Manteia.
OMIM - 300193
RefSeq - NM_001301229
RefSeq - NM_001301231
RefSeq - NM_005342
RefSeq - NM_001301228
RefSeq Peptide - NP_001288157
RefSeq Peptide - NP_001288160
RefSeq Peptide - NP_005333
RefSeq Peptide - NP_001288158
swissprot - O15347
swissprot - E7ES08
swissprot - E7EQU1
swissprot - E9PES6
Ensembl - ENSG00000029993
  
Related genetic diseases (OMIM): 300915 - ?Microphthalmia, syndromic 13, 300915
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hmgb3aENSDARG00000056725Danio rerio
 hmgb3bENSDARG00000006408Danio rerio
 HMGB3ENSGALG00000009071Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HMGB1 / P09429 / high mobility group box 1ENSG0000018940376
HMGB2 / P26583 / high mobility group box 2ENSG0000016410473
HMGB4 / Q8WW32 / high mobility group box 4ENSG0000017625634


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain
 IPR017967  HMG box A DNA-binding domain, conserved site
 IPR031077  High mobility group protein HMGB3
 IPR036910  High mobility group box domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0006310 DNA recombination ISS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development TAS
 biological_processGO:0032392 DNA geometric change ISS
 biological_processGO:0045087 innate immune response IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0000400 four-way junction DNA binding ISS
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003690 double-stranded DNA binding ISS
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008301 DNA binding, bending TAS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
Show

 HP:0000377 Abnormal form of ears "Abnormal form of the out part of the ear (also referred to as the auricle or pinna)." [HPO:curators]
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 HP:0000482 Microcornea "A congenital abnormality of the `cornea` (FMA:58238) in which the cornea and the anterior segment of the eye are smaller than normal. The horizontal diameter of the cornea does not reach 10 mm even in adulthood." [HPO:probinson]
Show

 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000565 Esotropia 
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000589 Coloboma "A developmental defect characterized by a cleft of some portion of the `eye` (FMA:54448`) or ocular adnexa." [HPO:probinson]
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001417 X-linked inheritance "A mode of inheritance that is observed for traits related to a gene encoded on the X chromosome." [HPO:curators]
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 HP:0002751 Kyphoscoliosis 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0012043 Pendular nystagmus "Rhythmic, involuntary sinusoidal oscillations of one or both eyes. The waveform of pendular nystagmus may occur in any direction." [HPO:probinson]
Show

 HP:0040080 Anteverted ears 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr