ENSDARG00000056175


Danio rerio

Features
Gene ID: ENSDARG00000056175
  
Biological name :scrt2
  
Synonyms : scratch family zinc finger 2 / scrt2
  
Possible biological names infered from orthology : Q8BTH6 / Q9NQ03 / scratch family transcriptional repressor 2 / Transcriptional repressor scratch 2
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 28527776
Gene end: 28534245
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000053781
NCBI entrez gene - 325372     See in Manteia.
RefSeq - NM_213637
RefSeq Peptide - NP_998802
swissprot - A4IGB7
ZFIN ID - ZDB-GENE-030131-4097
Ensembl - ENSDARG00000056175
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SCRT2ENSGALG00000028912Gallus gallus
 SCRT2ENSG00000215397Homo sapiens
 Scrt2ENSMUSG00000060257Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
scrt1b / scratch family zinc finger 1b / SCRT1* / Q9BWW7* / Q99M85* / Transcriptional repressor scratch 1 * / scratch family transcriptional repressor 1*ENSDARG0000004021461
scrt1a / scratch family zinc finger 1a / SCRT1* / Q9BWW7* / scratch family transcriptional repressor 1*ENSDARG0000010082161
snai2 / snail family zinc finger 2 / O43623* / P97469* / snail family transcriptional repressor 2*ENSDARG0000004004632
snai3 / snail family zinc finger 3 / Q9QY31* / Q3KNW1* / Zinc finger protein SNAI3 * / snail family transcriptional repressor 3*ENSDARG0000003124330
snai1b / snail family zinc finger 1b / SNAI1* / O95863* / snail family transcriptional repressor 1*ENSDARG0000004601929
snai1a / snail family zinc finger 1a / SNAI1* / Q02085* / O95863* / snail family zinc finger 1* / snail family transcriptional repressor 1*ENSDARG0000005699526
si:dkey-20i20.7ENSDARG0000009356221
si:dkey-20i20.3ENSDARG0000009224621
si:dkey-20i20.10ENSDARG0000009545520
si:dkey-20i20.11ENSDARG0000010188519
si:ch73-92e7.6ENSDARG0000009430919


Protein motifs (from Interpro)
Interpro ID Name
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0043516 regulation of DNA damage response, signal transduction by p53 class mediator IGI
 biological_processGO:0043523 regulation of neuron apoptotic process IMP
 biological_processGO:2000177 regulation of neural precursor cell proliferation IGI
 molecular_functionGO:0003676 nucleic acid binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000075 spinal cord spinal cord has extra parts of type primary motor neuron , abnormal
spinal cord has extra parts of type neuron , abnormal
spinal cord has extra parts of type primary interneuron , abnormal
Show

 ZFA:0000098 proliferative region proliferative region mislocalised , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased length , abnormal
whole organism opaque , abnormal
Show

 ZFA:0009242 primary neuron primary neuron proliferative , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr