ENSDARG00000040046


Danio rerio

Features
Gene ID: ENSDARG00000040046
  
Biological name :snai2
  
Synonyms : snai2 / snail family zinc finger 2
  
Possible biological names infered from orthology : O43623 / P97469 / snail family transcriptional repressor 2
  
Species: Danio rerio
  
Chr. number: 24
Strand: 1
Band:
Gene start: 35387517
Gene end: 35393533
  
Corresponding Affymetrix probe sets: Dr.20.1.S1_at (Zebrafish Array)   Dr.20.3.S1_at (Zebrafish Array)   Dr.20.3.S1_x_at (Zebrafish Array)   NM_001008581_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000058570
NCBI entrez gene - 494038     See in Manteia.
RefSeq - XM_009297590
RefSeq - NM_001008581
RefSeq Peptide - NP_001008581
swissprot - Q5PQY5
ZFIN ID - ZDB-GENE-030326-6
Ensembl - ENSDARG00000040046
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000030902Gallus gallus
 SNAI2ENSG00000019549Homo sapiens
 Snai2ENSMUSG00000022676Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
snai1b / snail family zinc finger 1b / SNAI1* / O95863* / snail family transcriptional repressor 1*ENSDARG0000004601954
snai3 / snail family zinc finger 3 / Q9QY31* / Q3KNW1* / Zinc finger protein SNAI3 * / snail family transcriptional repressor 3*ENSDARG0000003124353
snai1a / snail family zinc finger 1a / SNAI1* / Q02085* / O95863* / snail family zinc finger 1* / snail family transcriptional repressor 1*ENSDARG0000005699550
scrt1b / scratch family zinc finger 1b / SCRT1* / Q9BWW7* / Q99M85* / Transcriptional repressor scratch 1 * / scratch family transcriptional repressor 1*ENSDARG0000004021440
scrt1a / scratch family zinc finger 1a / SCRT1* / Q9BWW7* / scratch family transcriptional repressor 1*ENSDARG0000010082140
scrt2 / scratch family zinc finger 2 / Q9NQ03* / scratch family transcriptional repressor 2*ENSDARG0000005617539
si:dkey-20i20.7ENSDARG0000009356228
si:dkey-20i20.3ENSDARG0000009224627
si:dkey-20i20.11ENSDARG0000010188524
si:dkey-20i20.10ENSDARG0000009545523
si:ch73-92e7.6ENSDARG0000009430921


Protein motifs (from Interpro)
Interpro ID Name
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003676 nucleic acid binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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