ENSG00000019549


Homo sapiens

Features
Gene ID: ENSG00000019549
  
Biological name :SNAI2
  
Synonyms : O43623 / SNAI2 / snail family transcriptional repressor 2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: -1
Band: q11.21
Gene start: 48917604
Gene end: 48921740
  
Corresponding Affymetrix probe sets: 213139_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000380034
Ensembl peptide - ENSP00000494171
Ensembl peptide - ENSP00000020945
NCBI entrez gene - 6591     See in Manteia.
OMIM - 602150
RefSeq - NM_003068
RefSeq Peptide - NP_003059
swissprot - A0A1X7SC17
swissprot - O43623
Ensembl - ENSG00000019549
  
Related genetic diseases (OMIM): 172800 - Piebaldism, 172800
  608890 - Waardenburg syndrome, type 2D, 608890

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snai2ENSDARG00000040046Danio rerio
 ENSGALG00000030902Gallus gallus
 Snai2ENSMUSG00000022676Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SNAI1 / O95863 / snail family transcriptional repressor 1ENSG0000012421653
SNAI3 / Q3KNW1 / snail family transcriptional repressor 3ENSG0000018566951
SCRT2 / Q9NQ03 / scratch family transcriptional repressor 2ENSG0000021539739
SCRT1 / Q9BWW7 / scratch family transcriptional repressor 1ENSG0000026167837


Protein motifs (from Interpro)
Interpro ID Name
 IPR013087  Zinc finger C2H2-type
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IMP
 biological_processGO:0001649 osteoblast differentiation IEP
 biological_processGO:0001837 epithelial to mesenchymal transition IMP
 biological_processGO:0003198 epithelial to mesenchymal transition involved in endocardial cushion formation ISS
 biological_processGO:0003273 cell migration involved in endocardial cushion formation ISS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006933 negative regulation of cell adhesion involved in substrate-bound cell migration IMP
 biological_processGO:0007219 Notch signaling pathway IMP
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007605 sensory perception of sound IMP
 biological_processGO:0009314 response to radiation IDA
 biological_processGO:0010839 negative regulation of keratinocyte proliferation IDA
 biological_processGO:0010957 negative regulation of vitamin D biosynthetic process IDA
 biological_processGO:0014032 neural crest cell development IMP
 biological_processGO:0016477 cell migration IGI
 biological_processGO:0030335 positive regulation of cell migration IMP
 biological_processGO:0032331 negative regulation of chondrocyte differentiation IMP
 biological_processGO:0032642 regulation of chemokine production IMP
 biological_processGO:0033629 negative regulation of cell adhesion mediated by integrin IC
 biological_processGO:0035066 positive regulation of histone acetylation IMP
 biological_processGO:0035921 desmosome disassembly IMP
 biological_processGO:0043066 negative regulation of apoptotic process IGI
 biological_processGO:0043473 pigmentation IMP
 biological_processGO:0043518 negative regulation of DNA damage response, signal transduction by p53 class mediator IMP
 biological_processGO:0044344 cellular response to fibroblast growth factor stimulus IEP
 biological_processGO:0045600 positive regulation of fat cell differentiation IMP
 biological_processGO:0045667 regulation of osteoblast differentiation IMP
 biological_processGO:0050872 white fat cell differentiation IMP
 biological_processGO:0060021 roof of mouth development IMP
 biological_processGO:0060070 canonical Wnt signaling pathway IMP
 biological_processGO:0060429 epithelium development ISS
 biological_processGO:0060536 cartilage morphogenesis IGI
 biological_processGO:0060693 regulation of branching involved in salivary gland morphogenesis IMP
 biological_processGO:0070563 negative regulation of vitamin D receptor signaling pathway IDA
 biological_processGO:0071364 cellular response to epidermal growth factor stimulus IDA
 biological_processGO:0071479 cellular response to ionizing radiation IGI
 biological_processGO:0090090 negative regulation of canonical Wnt signaling pathway IMP
 biological_processGO:1900387 negative regulation of cell-cell adhesion by negative regulation of transcription from RNA polymerase II promoter IMP
 biological_processGO:1902230 negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage IMP
 biological_processGO:2000647 negative regulation of stem cell proliferation IMP
 biological_processGO:2000810 regulation of bicellular tight junction assembly IMP
 biological_processGO:2000811 negative regulation of anoikis IMP
 biological_processGO:2001240 negative regulation of extrinsic apoptotic signaling pathway in absence of ligand ISS
 cellular_componentGO:0000790 nuclear chromatin IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001078 transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IDA
 molecular_functionGO:0003705 transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IDA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Regulation of PTEN gene transcription


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000077 Abnormality of the kidneys "An abnormality of the kidneys, the paired organs whose primary function is the production of urine." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000343 Long philtrum 
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 HP:0000365 Hearing loss 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000506 Telecanthus "An abnormally increased distance between the medial canthi (angle between eyelids) of the eyelids." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000598 Abnormality of the ears 
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 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0001053 Hypopigmented skin patches 
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 HP:0001100 Heterochromia iridis "Heterochromia iridis is a difference in the color of the iris in the two eyes." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001425 Heterogeneous 
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 HP:0002211 White forelock 
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 HP:0002216 Premature graying of hair 
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 HP:0002226 White eyebrows 
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 HP:0002227 White eyelashes 
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 HP:0002251 Congenital megacolon "An abnormality resulting from a lack of intestinal ganglion cells (i.e., an aganglionic section of bowel) that results in bowel obstruction with enlargement of the colon." [HPO:curators]
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 HP:0002648 Abnormality of skull shape "An abnormality of the shape of the skull." [HPO:curators]
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 HP:0002664 Neoplasia "An organ or organ-system abnormality that consists of uncontrolled autonomous cell-proliferation which can occur in any part of the body as a benign or malignant tumour or neoplasm." [HPO:curators]
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 HP:0004414 Abnormality of the pulmonary artery 
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 HP:0007443 Partial albinism 
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 HP:0007542 Absent pigmentation of ventral chest, abdomen and limbs 
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 HP:0007544 Piebald pigmentary variegation 
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 HP:0008069 Neoplasia of the skin 
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 HP:0008527 Congenital sensorineural hearing loss 
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 HP:0012733 Macule "A flat, distinct, discolored area of skin less than 1 cm wide that does not involve any change in the thickness or texture of the skin." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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