ENSG00000185669


Homo sapiens

Features
Gene ID: ENSG00000185669
  
Biological name :SNAI3
  
Synonyms : Q3KNW1 / SNAI3 / snail family transcriptional repressor 3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: -1
Band: q24.2
Gene start: 88677682
Gene end: 88686493
  
Corresponding Affymetrix probe sets: 1560228_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000327968
NCBI entrez gene - 333929     See in Manteia.
OMIM - 612741
RefSeq - NM_178310
RefSeq Peptide - NP_840101
swissprot - Q3KNW1
Ensembl - ENSG00000185669
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snai3ENSDARG00000031243Danio rerio
 Snai3ENSMUSG00000006587Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SNAI2 / O43623 / snail family transcriptional repressor 2ENSG0000001954947
SNAI1 / O95863 / snail family transcriptional repressor 1ENSG0000012421641
SCRT1 / Q9BWW7 / scratch family transcriptional repressor 1ENSG0000026167833
SCRT2 / Q9NQ03 / scratch family transcriptional repressor 2ENSG0000021539732


Protein motifs (from Interpro)
Interpro ID Name
 IPR002355  Multicopper oxidase, copper-binding site
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005667 transcription factor complex IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000982 transcription factor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0005507 copper ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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