ENSDARG00000056995


Danio rerio

Features
Gene ID: ENSDARG00000056995
  
Biological name :snai1a
  
Synonyms : snai1a / snail family zinc finger 1a
  
Possible biological names infered from orthology : O95863 / Q02085 / SNAI1 / snail family transcriptional repressor 1 / snail family zinc finger 1
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 25251495
Gene end: 25257595
  
Corresponding Affymetrix probe sets: Dr.15.1.S1_a_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000111074
Ensembl peptide - ENSDARP00000111412
NCBI entrez gene - 30273     See in Manteia.
RefSeq - NM_001313700
RefSeq - NM_001313699
RefSeq Peptide - NP_001300628
RefSeq Peptide - NP_001300629
swissprot - F1QGE1
swissprot - Q90274
ZFIN ID - ZDB-GENE-990415-255
Ensembl - ENSDARG00000056995
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNAI1ENSG00000124216Homo sapiens
 Snai1ENSMUSG00000042821Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
snai1b / snail family zinc finger 1b / SNAI1* / O95863* / snail family transcriptional repressor 1*ENSDARG0000004601961
snai2 / snail family zinc finger 2 / O43623* / P97469* / snail family transcriptional repressor 2*ENSDARG0000004004649
snai3 / snail family zinc finger 3 / Q9QY31* / Q3KNW1* / Zinc finger protein SNAI3 * / snail family transcriptional repressor 3*ENSDARG0000003124341
scrt1a / scratch family zinc finger 1a / SCRT1* / Q9BWW7* / scratch family transcriptional repressor 1*ENSDARG0000010082134
scrt1b / scratch family zinc finger 1b / SCRT1* / Q9BWW7* / Q99M85* / Transcriptional repressor scratch 1 * / scratch family transcriptional repressor 1*ENSDARG0000004021432
scrt2 / scratch family zinc finger 2 / Q9NQ03* / scratch family transcriptional repressor 2*ENSDARG0000005617532
si:dkey-20i20.3ENSDARG0000009224623
si:dkey-20i20.7ENSDARG0000009356223
si:dkey-20i20.11ENSDARG0000010188520
si:dkey-20i20.10ENSDARG0000009545519
si:ch73-92e7.6ENSDARG0000009430919


Protein motifs (from Interpro)
Interpro ID Name
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001837 epithelial to mesenchymal transition IMP
 biological_processGO:0007369 gastrulation IDA
 biological_processGO:0008078 mesodermal cell migration IMP
 biological_processGO:0009953 dorsal/ventral pattern formation IMP
 biological_processGO:0042074 cell migration involved in gastrulation IMP
 cellular_componentGO:0005634 nucleus IMP
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0051059 NF-kappaB binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000060 prechordal plate prechordal plate mislocalised posteriorly , abnormal
prechordal plate elongated , abnormal
Show

 ZFA:0000077 tail bud tail bud decreased cellular motility , abnormal
Show

 ZFA:0000279 segmental plate segmental plate increased cellular motility , abnormal
Show

 ZFA:0000317 postcranial axial skeleton postcranial axial skeleton ossified , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr