ENSDARG00000046019


Danio rerio

Features
Gene ID: ENSDARG00000046019
  
Biological name :snai1b
  
Synonyms : snai1b / snail family zinc finger 1b
  
Possible biological names infered from orthology : O95863 / Q02085 / SNAI1 / snail family transcriptional repressor 1 / snail family zinc finger 1
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 2502181
Gene end: 2513300
  
Corresponding Affymetrix probe sets: Dr.625.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000067651
NCBI entrez gene - 792194     See in Manteia.
swissprot - B3DH44
ZFIN ID - ZDB-GENE-980526-514
Ensembl - ENSDARG00000046019
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNAI1ENSG00000124216Homo sapiens
 Snai1ENSMUSG00000042821Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
snai1a / snail family zinc finger 1a / SNAI1* / Q02085* / O95863* / snail family zinc finger 1* / snail family transcriptional repressor 1*ENSDARG0000005699562
snai2 / snail family zinc finger 2 / O43623* / P97469* / snail family transcriptional repressor 2*ENSDARG0000004004655
snai3 / snail family zinc finger 3 / Q9QY31* / Q3KNW1* / Zinc finger protein SNAI3 * / snail family transcriptional repressor 3*ENSDARG0000003124346
scrt1a / scratch family zinc finger 1a / SCRT1* / Q9BWW7* / scratch family transcriptional repressor 1*ENSDARG0000010082138
scrt1b / scratch family zinc finger 1b / SCRT1* / Q9BWW7* / Q99M85* / Transcriptional repressor scratch 1 * / scratch family transcriptional repressor 1*ENSDARG0000004021436
scrt2 / scratch family zinc finger 2 / Q9NQ03* / scratch family transcriptional repressor 2*ENSDARG0000005617536
si:dkey-20i20.3ENSDARG0000009224627
si:dkey-20i20.7ENSDARG0000009356226
si:dkey-20i20.11ENSDARG0000010188523
si:dkey-20i20.10ENSDARG0000009545522
si:ch73-92e7.6ENSDARG0000009430921


Protein motifs (from Interpro)
Interpro ID Name
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003261 cardiac muscle progenitor cell migration to the midline involved in heart field formation IMP
 biological_processGO:0007507 heart development IMP
 biological_processGO:0008078 mesodermal cell migration IMP
 biological_processGO:0022408 negative regulation of cell-cell adhesion IMP
 biological_processGO:0042074 cell migration involved in gastrulation IMP
 biological_processGO:0060975 cardioblast migration to the midline involved in heart field formation IMP
 molecular_functionGO:0003676 nucleic acid binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000009 cardiac ventricle cardiac ventricle decreased size , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000058 polster polster morphology , abnormal
polster increased length , abnormal
Show

 ZFA:0000060 prechordal plate prechordal plate shape , abnormal
prechordal plate elongated , abnormal
prechordal plate increased size , abnormal
Show

 ZFA:0000155 somite somite shape , abnormal
Show

 ZFA:0000471 atrium atrium position , abnormal
Show

 ZFA:0001094 whole organism whole organism anterior-posterior axis decreased length , abnormal
whole organism increased amount , abnormal
whole organism decreased amount , abnormal
Show

 ZFA:0001115 trunk trunk decreased length , abnormal
Show

 ZFA:0001117 post-vent region post-vent region decreased length , abnormal
Show

 ZFA:0001315 atrioventricular canal atrioventricular canal increased distribution , abnormal
Show

 ZFA:0001462 somite border somite border morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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