ENSDARG00000040214


Danio rerio

Features
Gene ID: ENSDARG00000040214
  
Biological name :scrt1b
  
Synonyms : scratch family zinc finger 1b / scrt1b
  
Possible biological names infered from orthology : Q99M85 / Q9BWW7 / scratch family transcriptional repressor 1 / SCRT1 / Transcriptional repressor scratch 1
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 31186083
Gene end: 31188715
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000058828
NCBI entrez gene - 541533     See in Manteia.
RefSeq - NM_001014347
RefSeq Peptide - NP_001014369
swissprot - F1R2G9
ZFIN ID - ZDB-GENE-050327-72
Ensembl - ENSDARG00000040214
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SCRT1ENSG00000261678Homo sapiens
 Scrt1ENSMUSG00000048385Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
scrt1a / scratch family zinc finger 1a / SCRT1* / Q9BWW7* / scratch family transcriptional repressor 1*ENSDARG0000010082191
scrt2 / scratch family zinc finger 2 / Q9NQ03* / scratch family transcriptional repressor 2*ENSDARG0000005617568
snai2 / snail family zinc finger 2 / O43623* / P97469* / snail family transcriptional repressor 2*ENSDARG0000004004637
snai3 / snail family zinc finger 3 / Q9QY31* / Q3KNW1* / Zinc finger protein SNAI3 * / snail family transcriptional repressor 3*ENSDARG0000003124333
snai1b / snail family zinc finger 1b / SNAI1* / O95863* / snail family transcriptional repressor 1*ENSDARG0000004601933
snai1a / snail family zinc finger 1a / SNAI1* / Q02085* / O95863* / snail family zinc finger 1* / snail family transcriptional repressor 1*ENSDARG0000005699530
si:dkey-20i20.7ENSDARG0000009356223
si:dkey-20i20.3ENSDARG0000009224622
si:dkey-20i20.10ENSDARG0000009545521
si:dkey-20i20.11ENSDARG0000010188521
si:ch73-92e7.6ENSDARG0000009430920


Protein motifs (from Interpro)
Interpro ID Name
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003676 nucleic acid binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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