ENSDARG00000056842


Danio rerio

Features
Gene ID: ENSDARG00000056842
  
Biological name :usp30
  
Synonyms : A2BGT0 / ubiquitin specific peptidase 30 / usp30
  
Possible biological names infered from orthology : Q3UN04 / Q70CQ3
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 20125934
Gene end: 20135679
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000073858
NCBI entrez gene - 559099     See in Manteia.
RefSeq - NM_001162484
RefSeq Peptide - NP_001155956
swissprot - A2BGT0
ZFIN ID - ZDB-GENE-060526-335
Ensembl - ENSDARG00000056842
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 USP30ENSGALG00000040265Gallus gallus
 USP30ENSG00000135093Homo sapiens
 Usp30ENSMUSG00000029592Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR028889  Ubiquitin specific protease domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000422 autophagy of mitochondrion ISS
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0008053 mitochondrial fusion ISS
 biological_processGO:0016579 protein deubiquitination ISS
 biological_processGO:0035871 protein K11-linked deubiquitination ISS
 biological_processGO:0044313 protein K6-linked deubiquitination ISS
 cellular_componentGO:0005739 mitochondrion ISS
 cellular_componentGO:0005741 mitochondrial outer membrane ISS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004197 cysteine-type endopeptidase activity ISS
 molecular_functionGO:0004843 thiol-dependent ubiquitin-specific protease activity ISS
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008234 cysteine-type peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity ISS


Pathways (from Reactome)
Pathway description
Ub-specific processing proteases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000099996 Q6NVC5 / rhot1a / ras homolog family member T1a / RHOT1* / Q8IXI2* / Q8BG51* / ras homolog family member T1*  / complex
 ENSDARG00000103566 Q6DH66 / tomm20b / translocase of outer mitochondrial membrane 20b / TOMM20* / Q15388* / Q9DCC8* / translocase of outer mitochondrial membrane 20* / translocase of outer mitochondrial membr...  / complex






 

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