ENSDARG00000099996


Danio rerio

Features
Gene ID: ENSDARG00000099996
  
Biological name :rhot1a
  
Synonyms : Q6NVC5 / ras homolog family member T1a / rhot1a
  
Possible biological names infered from orthology : Q8BG51 / Q8IXI2 / ras homolog family member T1 / RHOT1
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 26288981
Gene end: 26319758
  
Corresponding Affymetrix probe sets: Dr.14651.1.A1_at (Zebrafish Array)   Dr.6639.1.S1_at (Zebrafish Array)   NM_212704_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000135168
Ensembl peptide - ENSDARP00000141563
Ensembl peptide - ENSDARP00000139254
NCBI entrez gene - 327143     See in Manteia.
RefSeq - NM_212704
RefSeq Peptide - NP_997869
swissprot - A0A0R4ISG5
swissprot - A0A0R4ILB0
swissprot - Q6NVC5
ZFIN ID - ZDB-GENE-030131-5354
Ensembl - ENSDARG00000099996
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RHOT1ENSGALG00000003397Gallus gallus
 RHOT1ENSG00000126858Homo sapiens
 Rhot1ENSMUSG00000017686Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rhot1b / ras homolog family member T1 / RHOT1* / Q8BG51* / Q8IXI2*ENSDARG0000010331382
rhot2 / Q32LU1 / ras homolog family member T2 / Q8IXI1* / Q8JZN7* / Gm20683*ENSDARG0000005632861


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR002048  EF-hand domain
 IPR005225  Small GTP-binding protein domain
 IPR011992  EF-hand domain pair
 IPR013566  EF hand associated, type-1
 IPR013567  EF hand associated, type-2
 IPR018247  EF-Hand 1, calcium-binding site
 IPR020860  MIRO domain
 IPR021181  Mitochondrial Rho GTPase
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007005 mitochondrion organization IEA
 biological_processGO:0019725 cellular homeostasis ISS
 biological_processGO:0047497 mitochondrion transport along microtubule ISS
 biological_processGO:0097345 mitochondrial outer membrane permeabilization ISS
 cellular_componentGO:0005739 mitochondrion IDA
 cellular_componentGO:0005741 mitochondrial outer membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031307 integral component of mitochondrial outer membrane ISS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005525 GTP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Rho GTPase cycle
Ub-specific processing proteases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism anterior-posterior axis decreased length , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000056842 usp30 / A2BGT0 / ubiquitin specific peptidase 30 / Q3UN04* / Q70CQ3*  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr