ENSDARG00000103313


Danio rerio

Features
Gene ID: ENSDARG00000103313
  
Biological name :rhot1b
  
Synonyms : ras homolog family member T1 / rhot1b
  
Possible biological names infered from orthology : Q8BG51 / Q8IXI2 / RHOT1
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 18569453
Gene end: 18595105
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000140377
NCBI entrez gene - 561933     See in Manteia.
RefSeq - NM_001082826
RefSeq - XM_005166191
RefSeq Peptide - NP_001076295
swissprot - A0A0R4IVN5
ZFIN ID - ZDB-GENE-061009-52
Ensembl - ENSDARG00000103313
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RHOT1ENSGALG00000003397Gallus gallus
 RHOT1ENSG00000126858Homo sapiens
 Rhot1ENSMUSG00000017686Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q6NVC5 / rhot1a / ras homolog family member T1a / RHOT1* / Q8IXI2* / Q8BG51* / ras homolog family member T1*ENSDARG0000009999677
rhot2 / Q32LU1 / ras homolog family member T2 / Q8IXI1* / Q8JZN7* / Gm20683*ENSDARG0000005632856


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR002048  EF-hand domain
 IPR005225  Small GTP-binding protein domain
 IPR011992  EF-hand domain pair
 IPR013566  EF hand associated, type-1
 IPR013567  EF hand associated, type-2
 IPR018247  EF-Hand 1, calcium-binding site
 IPR020860  MIRO domain
 IPR021181  Mitochondrial Rho GTPase
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007005 mitochondrion organization IEA
 cellular_componentGO:0005739 mitochondrion IDA
 cellular_componentGO:0005741 mitochondrial outer membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031307 integral component of mitochondrial outer membrane IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005525 GTP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Rho GTPase cycle
Ub-specific processing proteases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism anterior-posterior axis decreased length , abnormal
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 ZFA:0001114 head head decreased size , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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