ENSDARG00000057437


Danio rerio

Features
Gene ID: ENSDARG00000057437
  
Biological name :apodb
  
Synonyms : apodb / apolipoprotein Db
  
Possible biological names infered from orthology : APOD / apolipoprotein D / P05090 / P51910
  
Species: Danio rerio
  
Chr. number: 24
Strand: -1
Band:
Gene start: 26306362
Gene end: 26328721
  
Corresponding Affymetrix probe sets: Dr.15815.1.A1_at (Zebrafish Array)   NM_001037695_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000074563
Ensembl peptide - ENSDARP00000110384
NCBI entrez gene - 567972     See in Manteia.
RefSeq - NM_001037695
RefSeq - XM_005162781
RefSeq Peptide - NP_001032784
swissprot - F1QDM9
ZFIN ID - ZDB-GENE-051023-8
Ensembl - ENSDARG00000057437
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 APODENSGALG00000006995Gallus gallus
 APODENSG00000189058Homo sapiens
 ApodENSMUSG00000022548Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
apoda.1 / apolipoprotein Da, duplicate 1 / APOD* / P05090* / P51910* / apolipoprotein D*ENSDARG0000006034555
apoda.2 / apolipoprotein Da, duplicate 2 / APOD* / P05090* / P51910* / apolipoprotein D*ENSDARG0000006035043


Protein motifs (from Interpro)
Interpro ID Name
 IPR000566  Lipocalin/cytosolic fatty-acid binding domain
 IPR002969  Apolipoprotein D
 IPR012674  Calycin
 IPR022271  Lipocalin, ApoD type
 IPR022272  Lipocalin family conserved site
 IPR026222  Apolipoprotein D, vertebrates


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006869 lipid transport IEA
 biological_processGO:0007568 aging IEA
 molecular_functionGO:0008289 lipid binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr