ENSDARG00000058924


Danio rerio

Features
Gene ID: ENSDARG00000058924
  
Biological name :pou1f1
  
Synonyms : pou1f1 / POU class 1 homeobox 1
  
Possible biological names infered from orthology : P28069 / POU domain, class 1, transcription factor 1 / Q00286
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 19132885
Gene end: 19161982
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000076317
NCBI entrez gene - 405777     See in Manteia.
RefSeq - NM_212851
RefSeq Peptide - NP_998016
swissprot - Q6TGI4
ZFIN ID - ZDB-GENE-040630-7
Ensembl - ENSDARG00000058924
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 POU1F1ENSGALG00000015495Gallus gallus
 P28069ENSG00000064835Homo sapiens
 Pou1f1ENSMUSG00000004842Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P79745 / pou3f3b / POU class 3 homeobox 3bENSDARG0000009589631
pou2f1b / POU class 2 homeobox 1b / P25425* / POU2F1* / P14859* / POU class 2 homeobox 1* / POU domain, class 2, transcription factor 1 *ENSDARG0000000799630
P56224 / pou3f3a / POU class 3 homeobox 3aENSDARG0000004203230
pou2f2a / POU class 2 homeobox 2a / Q00196* / P09086* / POU2F2* / POU class 2 homeobox 2* / POU domain, class 2, transcription factor 2 *ENSDARG0000003681629
Q90482 / pou3f1 / POU class 3 homeobox 1 / Q03052* / P21952* / POU domain, class 3, transcription factor 1 *ENSDARG0000000982328
P79746 / pou3f2b / POU class 3 homeobox 2b / POU3F2* / P20265* / P31360* / POU class 3 homeobox 2* / POU domain, class 3, transcription factor 2*ENSDARG0000007626228
pou2f2a / POU class 2 homeobox 2a / Q00196* / P09086* / POU2F2* / POU class 2 homeobox 2* / POU domain, class 2, transcription factor 2 *ENSDARG0000001965828
pou4f2 / POU class 4 homeobox 2 / Q12837* / Q63934* / POU domain, class 4, transcription factor 2 *ENSDARG0000006973728
pou2f3 / POU class 2 homeobox 3 / Q9UKI9*ENSDARG0000005238727
pou3f2a / POU class 3 homeobox 2aENSDARG0000007022027
pou4f1 / POU class 4 homeobox 1 / Q01851*ENSDARG0000000555927
zgc:158291ENSDARG0000004437526
pou4f3 / Q90435 / POU class 4 homeobox 3 / Q15319*ENSDARG0000000620625
pou5f3 / POU domain, class 5, transcription factor 3 / POU5F2* / Q8N7G0* / P20263* / POU5F1* / Q01860* / Q06416* / POU5F1B* / POU class 5 homeobox 1* / POU class 5 homeobox 1B* / POU domain...ENSDARG0000004477425


Protein motifs (from Interpro)
Interpro ID Name
 IPR000327  POU-specific domain
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR010982  Lambda repressor-like, DNA-binding domain superfamily
 IPR013847  POU domain
 IPR015586  Pituitary-specific positive transcription factor 1
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001708 cell fate specification IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain quality , abnormal
Show

 ZFA:0000118 hypophysis hypophysis quality , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased length , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr