ENSDARG00000059360


Danio rerio

Features
Gene ID: ENSDARG00000059360
  
Biological name :srsf3b
  
Synonyms : serine/arginine-rich splicing factor 3b / srsf3b
  
Possible biological names infered from orthology : Gm12355 / P84103 / P84104 / serine and arginine rich splicing factor 3 / serine/arginine-rich splicing factor 3 / SRSF3
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 613265
Gene end: 622967
  
Corresponding Affymetrix probe sets: Dr.3509.1.S1_at (Zebrafish Array)   NM_201323_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000119957
Ensembl peptide - ENSDARP00000151665
Ensembl peptide - ENSDARP00000122246
Ensembl peptide - ENSDARP00000097414
Ensembl peptide - ENSDARP00000113278
Ensembl peptide - ENSDARP00000114692
NCBI entrez gene - 100145909     See in Manteia.
RefSeq - NM_001309473
RefSeq - NM_201323
RefSeq Peptide - NP_001296402
RefSeq Peptide - NP_958480
RefSeq Peptide - NP_001296401
swissprot - A5WWG5
swissprot - A5WWG4
ZFIN ID - ZDB-GENE-071005-2
Ensembl - ENSDARG00000059360
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SRSF3ENSGALG00000000533Gallus gallus
 SRSF3ENSG00000112081Homo sapiens
 Gm12355ENSMUSG00000078134Mus musculus
 Srsf3ENSMUSG00000071172Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
srsf3a / serine/arginine-rich splicing factor 3a / SRSF3* / P84104* / P84103* / Gm12355* / serine/arginine-rich splicing factor 3* / serine and arginine rich splicing factor 3*ENSDARG0000002539788
srsf3a / serine/arginine-rich splicing factor 3a / SRSF3* / P84104* / P84103* / Gm12355* / serine/arginine-rich splicing factor 3* / serine and arginine rich splicing factor 3*ENSDARG0000010081588
srsf7a / serine/arginine-rich splicing factor 7aENSDARG0000003532555
srsf7b / serine/arginine-rich splicing factor 7b / SRSF7* / Q16629* / serine and arginine rich splicing factor 7*ENSDARG0000010105745


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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