ENSDARG00000101057


Danio rerio

Features
Gene ID: ENSDARG00000101057
  
Biological name :srsf7b
  
Synonyms : serine/arginine-rich splicing factor 7b / srsf7b
  
Possible biological names infered from orthology : Q16629 / Q8BL97 / serine and arginine rich splicing factor 7 / serine/arginine-rich splicing factor 7 / SRSF7
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 44356504
Gene end: 44363032
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000136981
Ensembl peptide - ENSDARP00000139227
NCBI entrez gene - 572211     See in Manteia.
swissprot - A0A0R4ISP5
swissprot - Q4V8Q5
ZFIN ID - ZDB-GENE-050913-95
Ensembl - ENSDARG00000101057
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000038528Gallus gallus
 SRSF7ENSGALG00000033120Gallus gallus
 SRSF7ENSG00000115875Homo sapiens
 Srsf7ENSMUSG00000024097Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
srsf7a / serine/arginine-rich splicing factor 7aENSDARG0000003532557
srsf3a / serine/arginine-rich splicing factor 3a / SRSF3* / P84104* / P84103* / Gm12355* / serine/arginine-rich splicing factor 3* / serine and arginine rich splicing factor 3*ENSDARG0000002539741
srsf3b / serine/arginine-rich splicing factor 3b / SRSF3* / P84104* / P84103* / Gm12355* / serine/arginine-rich splicing factor 3* / serine and arginine rich splicing factor 3*ENSDARG0000005936041
srsf3a / serine/arginine-rich splicing factor 3a / SRSF3* / P84104* / P84103* / Gm12355* / serine/arginine-rich splicing factor 3* / serine and arginine rich splicing factor 3*ENSDARG0000010081541


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR001878  Zinc finger, CCHC-type
 IPR034651  SRSF7, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr