ENSDARG00000060103


Danio rerio

Features
Gene ID: ENSDARG00000060103
  
Biological name :cpeb3
  
Synonyms : cpeb3 / cytoplasmic polyadenylation element binding protein 3
  
Possible biological names infered from orthology : Q7TN99 / Q8NE35
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 42406883
Gene end: 42472060
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000078789
NCBI entrez gene - 100005268     See in Manteia.
RefSeq - NM_001167662
RefSeq Peptide - NP_001161134
swissprot - F1RE03
ZFIN ID - ZDB-GENE-090312-68
Ensembl - ENSDARG00000060103
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CPEB3ENSGALG00000006912Gallus gallus
 CPEB3ENSG00000107864Homo sapiens
 Cpeb3ENSMUSG00000039652Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cpeb4b / cytoplasmic polyadenylation element binding protein 4b / CPEB4* / Q17RY0* / cytoplasmic polyadenylation element binding protein 4*ENSDARG0000010049966
cpeb4a / cytoplasmic polyadenylation element binding protein 4a / CPEB4* / Q17RY0* / Q7TN98* / cytoplasmic polyadenylation element binding protein 4*ENSDARG0000005669162
cpeb2 / cytoplasmic polyadenylation element binding protein 2 / Q7Z5Q1*ENSDARG0000005260454
Q9YGX5 / cpeb1b / cytoplasmic polyadenylation element binding protein 1b / CPEB1* / RPS17* / P70166* / P08708* / Q9BZB8* / AC245033.1* / ribosomal protein S17* / cytoplasmic polyadenylation...ENSDARG0000000845424
cpeb1a / cytoplasmic polyadenylation element binding protein 1a / CPEB1* / RPS17* / P08708* / Q9BZB8* / P70166* / AC245033.1* / ribosomal protein S17* / cytoplasmic polyadenylation element ...ENSDARG0000004593223


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR032296  Cytoplasmic polyadenylation element-binding protein, ZZ domain
 IPR034819  Cytoplasmic polyadenylation element-binding protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 biological_processGO:0006417 regulation of translation IEA
 biological_processGO:2000766 negative regulation of cytoplasmic translation IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0043005 neuron projection IBA
 cellular_componentGO:0045202 synapse IBA
 cellular_componentGO:1990124 messenger ribonucleoprotein complex IBA
 molecular_functionGO:0000900 translation repressor activity, mRNA regulatory element binding IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IEA
 molecular_functionGO:0008135 translation factor activity, RNA binding IBA
 molecular_functionGO:0043022 ribosome binding IBA
 molecular_functionGO:0045182 translation regulator activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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